G1364341


Basic Information

Item Value
gene id G1364341
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 32054609 ~ 32056554 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1559106
AGATGGGATACTGTGACATGTAAACATCTTATCCCGTTTACTGTTATTTTTCGTGGTTTCCGCACAGAGGTAAATACAGTTTCAGGTTGGAAATTCGATGGATATTCGCCTGTAGTCTTCCTTACgtccaccaacagcagttagggaccgtcaacataATGACAAATCACATTTTTCAAATTTCAATTGCTATTTAACCATTACTCCTAAAACTTTCAAAATGGGTTCTAGCTAACCCGatggcatagacacacattgcaCACATTTATTTTTTGTCGATTTACATCTCGCActattttaaattattattatttttaatttcaaTAGCtcattggtcatgtgacctacgggactcaaacaaggttcagaatgtccactgactaaccttctatattgcacaccctttagttaggtccattttcatctcacaagaTTTACATTCATTTTTGAAATTGTAACATTTCAATAGCTCCAtggtcatgtgacctaatgacttcaaacaaggctcagaatgtccactcagtgggcctacacattgcacaccctttagcttgtccattttcatctcacatgattttacatgaatttttcTAAATgtaaaatttcaatagctccttgatCATGTAACCTAGGGACTTCAAACAAGGTTTAGCATGTCCACTGAGTGGGCCTACACATTAGAtcgtccattttcatctcacatgattttacatgaatcattcaaaatgtaaaaTTTCAATAGTTGTATGGTCATGTGACCTAGGGACTTCAAACAAGGtacagaatgtccactgactacccttctatattgcacaccctttagtttgtccattttcatctcacatgaaTTTTTCTAAATTTAGAATGACAATAGCTCCTTGCTCATGTGACCtagtgacttcaaacaaggttcagaatgttcactcagtgggcctacacattgcacaccctttaatttgtccattttcatctcacaagaTTTTACATGTGACCTGATTTCAAACATGGTGCAGAAtgtacccttctatattgcacactcttgtttgtgtactgtaaaaTCATGCGGTGTAATGTACATTTCTTCATAGTTTcacatttcaatagctccttggtcatgtcaatTACACACCTAAGAAGCGTGCAGTGGATATACACCCATATTGCATAACCTCTATATTGTTGTACATTAAGATTAATTTGACAATTAGGGGgttcagtccagtgttgtgtttaCCCTTTTCTTTAATATTTATCTATAATAATTGGTAGTTCTAAGTACTTATTGtccctgtttttttatttttctacaGTATTTAACAGCGGTAcacaataggagagagacagatggtatCTCCTTTCGTCGTTAATATCAACCATAAAGGAAAACGGCAAAGTACGAGAGTCatgctattaattgtccaaagcagggatggagagtgagctagtgaggtaggctgcagtgggtttgctggtcaatacatatactgaacatttAACCACAGTAATGGTGGCCAGTAAATCaattaataaaaatgtaatattgaCAAATTAAACAGAAATTGTAGACCTTTAATCTTTTCCAACATGTCAACAGACACTTCAGATAAGTATGAAACATTTCACAGTGTTAACTTTCTCTTTATCCATGGTTGATGTACATTtcagagcctcttcagtgtggatggggtatagcatgcattttcaacaacaaagactGCACTTCCAGTTAGTTGAATTATTTTGTCTTAATTCCCAGTTACAGCACATGGAACCACCGTTGGCATGCAAAACATTCAATCTTAAACAAAACAAAGCATAACACGTTATAAATTATATCAAATATCAATGCAGAATGACGAATTAGCCATCCATTGTGTTATATCATAAATTGTCTTGCATGCCGTCACTGTTGTCAAAAGAAtataaacatgttaaataaaGTTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1559106 True 1946 lncRNA 0.36 1 32054609 32056554

Neighbor

gene id symbol gene type direction distance location
LOC110491820 LOC106567387 coding downstream 64813 31966722 ~ 31989796 (-)
ttc34 ttc34 coding downstream 96607 31950519 ~ 31958002 (-)
si:ch211-28p3.4 LOC106579421 coding downstream 325666 31712301 ~ 31728943 (-)
LOC110491813 LOC106579422 coding downstream 558309 31474791 ~ 31496300 (-)
LOC110491807 LOC106576884 coding downstream 592364 31314091 ~ 31462245 (-)
LOC110491822 LOC106567384 coding upstream 394 32056948 ~ 32096133 (-)
LOC110491823 NA coding upstream 25153 32081707 ~ 32086786 (-)
LOC110491825 LOC100380856 coding upstream 173733 32230287 ~ 32350853 (-)
pigt LOC106567380 coding upstream 379673 32436227 ~ 32466311 (-)
LOC110491830 LOC106567378 coding upstream 562194 32618748 ~ 32628980 (-)
G1364366 NA non-coding downstream 9516 32044591 ~ 32045093 (-)
G1364358 NA non-coding downstream 21919 32032351 ~ 32032690 (-)
G1364357 NA non-coding downstream 22379 32031894 ~ 32032230 (-)
G1364347 LOC106581475 non-coding downstream 36962 32017413 ~ 32017647 (-)
G1364313 NA non-coding downstream 108053 31946321 ~ 31946556 (-)
G1364424 NA non-coding upstream 82584 32139138 ~ 32191970 (-)
G1364465 NA non-coding upstream 139868 32196422 ~ 32196717 (-)
G1364475 NA non-coding upstream 145580 32202134 ~ 32202363 (-)
G1364504 NA non-coding upstream 165277 32221831 ~ 32223847 (-)
G1364736 NA non-coding upstream 324668 32381222 ~ 32381591 (-)
G1364348 NA other downstream 35111 32018794 ~ 32019498 (-)
G1364105 NA other downstream 168497 31885749 ~ 31886112 (-)
G1363836 NA other downstream 403912 31639437 ~ 31650697 (-)
G1361619 NA other downstream 2129455 29923871 ~ 29925154 (-)
G1361290 NA other downstream 2557054 29497113 ~ 29497555 (-)
G1365099 NA other upstream 577911 32634465 ~ 32635511 (-)
G1366703 NA other upstream 1627457 33684011 ~ 33684473 (-)
G1366756 NA other upstream 1690846 33747400 ~ 33751407 (-)
LOC110491043 NA other upstream 1806952 33863087 ~ 33870055 (-)
LOC110491862 tnfrsf6b other upstream 3021547 35077807 ~ 35079706 (-)

Expression


Co-expression Network