XLOC_032751


Basic Information

Item Value
gene id XLOC_032751
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17199644 ~ 17206028 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065121
acgtccagaagcagactgaccttccctaggagcttgtcaacaggtaagagattcagacacattcagagatagcctggtgagcgagcagaagtgtgttgttgtgtggttctgaagacggtgttgtgtgtaacagagtgccgtcagctgattcgctggtgtctcagtgcagcaccgGCTGATCGACCCAGTTTAGCTGATCttgagagccatccctggttgcactgcacaggtggccagtgacattacacttatctaaatccagcagtcatggcttgggttgcattgtcaggttcagtgtagataaacgctgtcaatgatttgtagaaggagagcaggaggggcagaggaactgaggagaacagatcctgatcctgagcttcctctgctgcatctgtgagcctctgtgtgaagctgtacgagctgaagacacacacacacacacacacacacacctgcacacacaccagCTCGGAGTGCAAACTGgtataatgtgtttttaaaatgagactatgcaatgaaacaaatatataatataaattagtaaaacaagcctagagtaatttaaatgtttttcataattaaaaatggtTGTTTATACTCTGTCCAAGAATTCTGTCCTTTTCaaagaaaattaacaataaaattgatTTTATACCCAATAACCAAGAACTGAGTCTTTACTGTTTTCAACCAAAATGTAAATCTTGAACTTTTTTCACCTCcagtaaacaaaatgtttaaagtctgcatgaaccggaagttgcgactttttttttttatattgtgacacagttcctagagaaactgaatGTTTAATGAcacaacagtgggcgtggcttgttttttgtactgcaagctgattggatgtagtaaagtaggcatttcattcagaaagattgggaaaagtgtttgggcaaagttattacaacctaacagacacctcctgctcaccatttctgcttagtgtcaaaactgacagttggagcagcgtggttaaatatgttagtcaTGCCCAATTCCTAAGATATACGTAATCTGGcaatttaacagaaaaacaaacaggaagtgcatttttgtatttcaatTAAGATTATAAGGGTAAGGATTATAAGAAttatttctgcaataaatatggcAATAACAGGTCAGTTGGACATTaacaagcagtttaaaaaattcTATGAAAAGTTATATACATCTGAGACAAATAATAAAGCGAATATATCCCATTTTTTTGATACAATAGAAATGCCCAATATCAGTGATCAAGACAAGGATAATCTTGAACTACCCATATCTATAAAAGAAATTGAACAAgctatcaaacaaataaaaagcggAAAGGCACCTGGCCCTGATGGATTTATAAttgaattttataaaacattttcacacaaattatcCCCAATATTCAAAAAGGTGTTTATAGAAATAACTGAGCAGAAATCTTTACCACCAACTATGTCACAAGCTATTATCACTGTTATACACAAAAAAGGTAAGGATCCCTTGAAGTGTGACTCATATCGACCTATAAGTTTACTTTCGAATGATTACAAGATATTAGCAAAGATTTTGGCAGCAAGGCTTAATCCAGTCATACAAACACTTATTCATCAAGATCAAACAGGATTCATAGCAGGGCGGCAGCTTTCAAGCAACTTACGGAGACTATTTAATATACTTTACTCACAAAGTTCACATTTGCCAGAGGTGCTATTGTCATTAGATGCTCATAAAGCCTTTGACCGTATTGAGTATGAATATCTattcacagctctgaaaaatttTGGCTTTGGTCCTGGTTTTTGCACTTGGATTAGTATACTAAATTCGCATCCAACTGCTTGTATAAGAACTAACAAGGTAATATCAAACTTTTTTCCTTTATATAGAGGCACCAGACAGGGCTGTCCCCTTTCTCCCCTCCTATTTAATATAGCAATAGAGCCACTAGCTATAGCTTTAAGGAAAGAGTCAGACTTGCTAGGCATTAATAGGAGTGGGAAGACTCACAAGGTTTCACTGTACGCAGATGATCTCATTATATACATATCCAATCCTGATAGTTCCATACCCAAAACAATAGATCTTATAAATAGCTTTGGGGCAGTTTCAGGATaagaaattaatttcagtaaaagtATATTTTTCCAATTAATAAGATAGCAAAACAGTCAGACCtcagtaaattttcatttaaaattagtaATATATCTTTTAAGTACCTGGGAATTTCTGTGACCAGTACATACAAACAGCTATTTAGATGTAATTTTGATGCAGTGATGGAAAAAACGAAACAAGATTTAAACCGATGGTCTTTATTGCCTATCTCTCTTGCAGGCAGAATTAATGCGGTTAAGATGTCTACTTTGCCAAggttcttgtttttgtttcaaaTGTCCCAGTATTCATTCCTAAATCCTTCTTTAAGGAGCTGGATAAACAGGTGTCTTCTTTTATATGGAATAAAAGCATTCCACGAATTAGGAAAGCATTTTTAGAAAGGCAGAAAGAAGTTGGGGGACTGGCGTTGCCCAACTTTATGTATTACTATTGGTCATGTAACATTGAAAAAATTGTTTATCTGACAGATCATGTCAAAATCAGGAGAATGAACCTGAGTGGGTAGAGATGGAGCAGGCATCCTGTGGGACAGTTTCTCTGTTTTCAATGCTTTGTGCCCCACTACCACTTAATAGAAAATATCTGCCAAACAATCCTATAGTCAATGGTTTATTAAAGATATGGGCTCAGTTTAGGACGCATTTTAAGCAAAAGCAAGCGCTTTCTTTATTACCCATTACTTCCAATGCATTATTTCCACCATCCTTAATTGATCATGCTTTTCAGATCTGGTTTAGAAAGGGACTCAGATATGCAAGGGACTTCTTTCAAGGAAGTCATTTTATGTCATTTAAACATTGACTAAAGAATTGGATATtcctaaatcacatttcttcagaTATCTACAGGTAAGAAGTCTAGTAAAAAGGTATTTTAATACACTTTCAGCTCCTCCCATAAGTAGCTGGATTGAGGAGATCTTTGATCTAAATGCATCTGAGGGTGGTCTGATATCAAAAGTATACAGTCTGATTCAAAGAGCAGCTGCACCATCTCTAGATTTTCTAAAGAAACAGTGGGAAGATGACTTAGGAAATATAGTTCCAGAGTCAGTCTAGCAATTAACAATTAAGCAGATTCACTCAACATCTATTTGTGTCAAACACggtttattacaatttaagataatttatagGCTGCACTTTTCTAAAAGCAAATTGTCCAGAATATTTCCAGAAATTGACCCAACATGCTCTAGGTGCCACAGAGACGAGGCCACCTTAGGTCATATGTTCTGGACTGGAGGGGTTATGTCCATCCCTAAGACCATTTTGGACTGCGGTGTTCGAGCCTTTTTCTTATATATGTGAAAAGGAGATACTACCAGATCCAGTAATGGCAATATTTGGTGCGACACCTGAAAATCTTACACTACCAGCAGGTCAATTAAATGCACTAGCGTTCTCTACTTTGCTGGACTTAttcttttgcagtggaagtcaACTAAACCACCAACACATACTAAATGGGTAGAAAATGTCATGACGTATCTAAAGCTTGAAAAACTCAAATATAGCACCCAGGACTCAAATAATAGATTCTTCAAAGTTTGGAGACCCTTCCTGTCATATTTTGAGAACAGATTTAACCCAAATACTGAAATGTAAGCtctccccccccaccccccccccaccccaaatttttatttatttattttattttattttatttttttatttttatttatttatttttcgtaccttttacctttttctttttaattaatattatttcaccttgtatttgttttcttttttatgtacctTGTTCTTGTATATGTTTAAGTTGCTCTgttaaaagtttaataataagatttttctactaaatatggcaataaataaatgcagtaggGCTGGATGGTATGATGTATATATCATTATCGTGTACTGAAAAAGAGTTTTCTATTCTGTTTATACCTCAATGTAGGTGTAGTTAGCTCACGTCTAGCATGCGTGAGGCTGAGAAAGACTCTCTGGCAGTGTTGCCAATTGCTTTACATTAGAGCtgctcgatattggaaaaatctgacaatgCAATTTTTTAGTTTTGCTCTAATATACATTGCGAtaggaatataatttcaccagatgatttgaatagctatatttggaaagattttattaatttagctCGACTTGGATGATCAAGATTTTTTCTATGCAgttcatctgcataaattataacaaattacaagcaataataaataaataaacagtgctttatgcttTTCTGGGGAGtggaacagtattcaagtacagaaacgaaacaatcaaatgtaaaataacatggtcatcattggataaataatgtcaaatttaataatatctttatcttttaatcactaTTAAAATTAATCCTGcattgtgactattgcaaatacgcacattgcgatatcgatgctcaaacaatatattgttcaccactactttatattttcaacaaaaaggatcacaaagttttatttatacaaatttttatacaagaaatgtaatatttgtattttaaagggggaaaaaactgtttatttccttaaagtgtttacatgtttataatttcatttttgagttatttacttggggtatattttatatttgtgattAGATGTTACTTGAGaagtgtttataataatataattaaggtttgttcataaaactgtgaaatgtgagatacagtggaatttgttgttcatctgaagtcatgttttatttacaaaatacaccAGAGATGTTAATGTCTGTTAACTTTACCAGGTAATGATCATCATTTTTGTCATGAAGACTCCTGCTCCGCACCAGAGCCAATGCCTTCCACTGATTGACCAATGGTTCCTGTTCCTGGTTTACCTGTCGCTGGTCAGAAAGAGCAGGATCAGAGGGATTGTCCTTACATCCATCAGTCCACTCTCAGCGGGATTAGAAACACTtgggtcagtttatttatttaatttacttgacGCAGTTGGAATTTCAATGTCTCCTAAGGACATTTAAGCCACGATGACAAGTGTGTGTGGCAAGAAGACTTACACCTAGTTatcattagctgtgtttccatccaaagagatttat
>TCONS_00063734
gattctgcatccacagaccagaggaacagcaagaggaaaaggcagagcagcagccagcaaacactgtccacctcgtccagcagaccagccaaacgctctcgcagagacttgtaccagaagggcccgttgctgggacgaggtggattcggctctgtgtttgctgggatgcgcaggtctgatggactgccagtggccatcaagtacgtgtcgaaggaccggacccccgagcgactgaaagttgatggtcagggtcggctgccgctggaggtggcattgatgacccgtgtcacgtcagctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgctacatcctgatcctggagcgaccggatccttgccaagatctccagagcttctgtgaggagaacggctgtctggatgagcgtctggccaagaaagtgctggtgcagctgatcgcggccctaaaacactgcgagagccgcggcgtcctgcaccgggacgtcaaaccagaaaacctgctgatctccacagagtcccaggacatcaagctgctggacttcggctgtggagatctgctgaagcgatcggcctacaaatactttgcaggcactcctgcatacgctcctcctgagtggtttcgtagacatcgctaccatgcgactccagctacagtctggtcagtaggagtgacgctctacaacatcctgtgtgaccgtttcccattcagaggcgcacagagggtcacgtccagaagcagactgaccttccctaggagcttgtcaacaggtaagagattcaga

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048731 system development biological_process
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0050679 positive regulation of epithelial cell proliferation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0051270 regulation of cellular component movement biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0050789 regulation of biological process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:0042327 positive regulation of phosphorylation biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000116567

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065121 False 5198 lncRNA 0.35 1 17199644 17204841
TCONS_00063734 True 807 mRNA 0.57 5 17204785 17206028

Neighbor

gene id symbol gene type direction distance location
XLOC_032750 BX511311.10 coding downstream 17409 17182138 ~ 17182235 (-)
XLOC_032749 pimr19 coding downstream 20007 17178321 ~ 17179637 (-)
XLOC_032748 NA coding downstream 42442 17156614 ~ 17157202 (-)
XLOC_032747 NA coding downstream 44345 17154903 ~ 17155299 (-)
XLOC_032745 BX511311.7 coding downstream 84889 17114658 ~ 17114755 (-)
XLOC_032752 BX511311.9 coding upstream 2733 17208761 ~ 17208858 (-)
XLOC_032753 pimr18 coding upstream 58877 17264905 ~ 17266221 (-)
XLOC_032754 BX511311.6 coding upstream 62634 17268662 ~ 17268759 (-)
XLOC_032755 BX511311.2 coding upstream 75879 17281907 ~ 17285849 (-)
XLOC_032756 BX470083.3 coding upstream 149040 17355068 ~ 17355165 (-)
XLOC_032743 BX511311.1 non-coding downstream 98289 17099672 ~ 17101355 (-)
XLOC_032757 BX470083.2 non-coding upstream 179004 17385032 ~ 17385129 (-)

Expression


Co-expression Network