G1366181


Basic Information

Item Value
gene id G1366181
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33543160 ~ 33543680 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1561048
cagtagggatggtgccaggttttctccagacgtgacacttggcattcaggctaaagaggtcaatcttggttttattagaccagagaatctagtttctcatggtctgagagtctttaggtgccttttggcaaactctaagcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccataaaggcctgattggtggagtgctgcagagatggttgtctttctggaaggttctcccatctcaacagagaaactctagagctctgtcagagtgaccattgggttcttagtcacctccctgaccaaggcccttctcccccgattgctcagcttggccgggcgaccagctctaggaagagtctcagtggttccaaacttcttccatttaagaatgatgaggccactgtgttcttggggaccttcaatgctgcagacattttgtgGTACCCTTGCGCAcgtgtacctcgacacaatcctgtctctgagctcgaCGGACAATTccatcaacc

Function

NR:

description
Putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1561048 True 521 lncRNA 0.50 1 33543160 33543680

Neighbor

gene id symbol gene type direction distance location
foxl2l LOC100136213 coding upstream 190674 33351596 ~ 33352486 (+)
LOC110491836 LOC106567372 coding upstream 504766 33014941 ~ 33038394 (+)
LOC110491835 LOC106572137 coding upstream 533227 32978243 ~ 33082112 (+)
LOC110491833 LOC106567375 coding upstream 628911 32816523 ~ 32914249 (+)
phactr3a LOC106567379 coding upstream 1001309 32481622 ~ 32541851 (+)
kiaa2013 LOC106567369 coding downstream 1717 33545397 ~ 33560774 (+)
LOC110491840 LOC106567458 coding downstream 36159 33579839 ~ 33598864 (+)
nppal LOC106567368 coding downstream 82997 33626677 ~ 33627789 (+)
vnp vnp coding downstream 88576 33632256 ~ 33633908 (+)
nppb nppb coding downstream 91881 33635561 ~ 33636574 (+)
G1366180 NA non-coding upstream 88 33542845 ~ 33543072 (+)
G1366175 NA non-coding upstream 5368 33537513 ~ 33537792 (+)
G1366160 NA non-coding upstream 23450 33519397 ~ 33519710 (+)
G1366153 NA non-coding upstream 30939 33511185 ~ 33512221 (+)
G1366091 NA non-coding upstream 115370 33424572 ~ 33427790 (+)
G1366119 NA non-coding downstream 10400 33554080 ~ 33556665 (+)
G1366118 NA non-coding downstream 17996 33561676 ~ 33562135 (+)
G1366120 NA non-coding downstream 20014 33563694 ~ 33564088 (+)
G1366294 NA non-coding downstream 21675 33565355 ~ 33569634 (+)
G1366302 NA non-coding downstream 26348 33570028 ~ 33570401 (+)
G1364937 LOC106613263 other upstream 873029 32669696 ~ 32670131 (+)
G1364907 NA other upstream 936027 32606790 ~ 32607133 (+)
G1364768 NA other upstream 1141352 32401434 ~ 32401808 (+)
G1363401 NA other upstream 2307774 31234493 ~ 31235386 (+)
G1362902 fgfr2 other upstream 2587185 30954609 ~ 30955975 (+)
G1366438 NA other downstream 169553 33713233 ~ 33713620 (+)
LOC110491848 morn1 other downstream 573801 34073929 ~ 34154670 (+)
si:ch73-70k4.1 faap20 other downstream 890705 34434347 ~ 34441463 (+)
G1368422 NA other downstream 2199070 35706331 ~ 35779587 (+)
G1368473 yo84 other downstream 2288611 35832291 ~ 35832708 (+)

Expression


Co-expression Network