G1366119


Basic Information

Item Value
gene id G1366119
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33554080 ~ 33556665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1560983
gggaccaaatactaaacttttgactacttatttattatttggggcggcagggtagcctagtggttagagctttggactagtaaacgaaaggtttcatgttcaaatccccgagctgacaaggtacaaatctgtcgctctgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcatattttacaaataaaaaattcTATGAATAATTAGGGGTgtcattttgacccctacctcTTTGAAACGAAAAAAAATTGTACTTGTTAAACATTTGCTCAGAGTAAGAGAAGTTGCATTCGTATAATATAATCCCCCCAATATaactcagtatttgaattatttattttatacagtcattattgctcatctaCATCAAGGATGTCAACAATTTCGGACCCCACTATATTTTGCAATGACTAGCCTTTTAATTTAAGCCTATATATGAGATATGTACATTTGATTAGAAAACGTCTATGTCATTGATCACAGCAGTATAAGGAGTCCTCATTTAAGATGTCGGACCACAAAATCCCAGTTCTATTACTGAACATTTAACTATATGCACTAGCGTTGTCATAATACTAGTATCGTGTTaaggaaaaaacaaaacatgaagcGGACTTAATTTCTCCAGAATAACTGTCCTAATGttgaaaaaacacaaaataagTAGGTTTTTCAAGACCATAGTTTCATATTTTTCATGTTTTCTTTTTTGCCATGGATCTGGTATCGTAGTGTCGGGATACTGGTGTTGTGACAACCCTAACACGCACTAATGCATCAATAATATAGTCTTACTTGTTTCCTGACGCAAGTTGTTTTAGTCCATCGATTTCAGAAACAGTGCAAGCAACCTCCTTTTGTTGTACCTTATCAGAGAGGATGAGGCGACGTGAGTGGGTTTACTCcacccaaaatctgtccacgtCAAGCAGATCATTATTTATTAATCAAGTGGAGTTTTTGTATGAGGGCTAATCAGTGTCAAATTTAGTCTAGTTAAAATTCATGTGTGAATCTTATTTTATCTAATAAGGTTTCGTAATGCTTAGGTTGTTACAAGTGTACTGATATCAATGTGATAACGTGACTTTTTGAGAAAATACACTTTAAATCGGAGTTGTCCCGGTTGAAATTCGAGGCAAGCATAGAATCTCACTCTCCATTGAATAAAAGCGGTTGACGTCAACACACCTCATCAAATCGAAATCAAATTttatcggtcacatacacatatttagccggtgttattgcgggtgttaaaaaaataaaataagatgtatccaccaatccaaagacgGGAGTAGGCGGGAGCTTGACAGCCTGCCGTTTCCCTCTGTGGACAATGAATCCCATTGTTAGTGGAGACACAAGCATCTCGTCATTTTATCCATTATCTTTGACCTTATACGTATTTCCAAATGTAAGCTGCTTTTCCTGTCCGTGTGGATGCAAACAAGGTTTCCCCCCAACCTTAAGCCTCTGGTATAGCCAATGATGTGTTTTGTCCCCCTTTGTTCAATCCCTTTACTGGTGCCTTCAAGTCTTCTCTCAATCAACAAGTGTACGAATGTGGGTTTTGAATCTTTTCAGTTCTGTTCGCTTCAGTACTATCCTAATTTCTACCACCTCGATTTGACACGCGGCATAATAATTTCAGCAAGAAATTACTGAACCCAGATCGACCCAAGGTTGAGCTTCTTGTGGTCCGCCATCTTAAATGAGGACTCCTAATACGTTCAATGACACACAAGTGTTCTAATCAAATGTACATGTCTCATTTTAGACTACAGGCCTAAAACGCTAGTCATTGTAAAATATAGTGGGGTCTGAAATTCTAGACTTTGTttcaaaatgagaaagaaaatatgCCCATCGGGCATTTAGCCAAAGAGAGACATAAACTGGAAAACGCTAACGGGGTTAAACGAGGTGGTTCTAATCCGGGAATTTTCCAAAAGCTTCTTGATACTCATCTATCTACAGTATTTGTTGCAAAATTAGATGTGTGTTTGAAATAATGGGCACTACGAAGGATGGACATTTCTACTGTAAGTGGTTGTGCTTTGATTAACTATGACTGAGCGCCGCCAACTAATCCCTTTTCGCCGTGTGGCATCGTTTTggtttgtgtgtattttttttagTTTTTGGATGGTGTTTTCTTTTGATTCACTGATTAAATTAAGGAATTCAATTGTTCTCTCTTTGATAACCAATATAACAATAAGCTTGCTGTTTACTCATATCTATGTGTGTATAGGCACTCATCCTATCCCCAACCGACTTCTAGCTCCTAGGCACTTGTAGAGATTTCGATGACCGTTCCAGTAGCTCCACATTGTCTTCTGATAGGCCAGGTGGAATTTCTGCCATATTTCTTACACCTTTCCAATCTTCTTAGATCACATTTGCCCTGGGGTTAGAAGCTCAAGCTTGGGTCGATTTGGGATTggggtaaatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtactgtacagaaactcagcctaaaaccccaaacag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1560983 True 2560 lncRNA 0.38 2 33554080 33556665

Neighbor

gene id symbol gene type direction distance location
foxl2l LOC100136213 coding upstream 201594 33351596 ~ 33352486 (+)
LOC110491836 LOC106567372 coding upstream 515686 33014941 ~ 33038394 (+)
LOC110491835 LOC106572137 coding upstream 544147 32978243 ~ 33082112 (+)
LOC110491833 LOC106567375 coding upstream 639831 32816523 ~ 32914249 (+)
phactr3a LOC106567379 coding upstream 1012229 32481622 ~ 32541851 (+)
LOC110491840 LOC106567458 coding downstream 23174 33579839 ~ 33598864 (+)
nppal LOC106567368 coding downstream 70012 33626677 ~ 33627789 (+)
vnp vnp coding downstream 75591 33632256 ~ 33633908 (+)
nppb nppb coding downstream 78896 33635561 ~ 33636574 (+)
anp anp coding downstream 82939 33639604 ~ 33641206 (+)
G1366181 NA non-coding upstream 10400 33543160 ~ 33543680 (+)
G1366180 NA non-coding upstream 11008 33542845 ~ 33543072 (+)
G1366175 NA non-coding upstream 16288 33537513 ~ 33537792 (+)
G1366160 NA non-coding upstream 34370 33519397 ~ 33519710 (+)
G1366153 NA non-coding upstream 41859 33511185 ~ 33512221 (+)
G1366118 NA non-coding downstream 5011 33561676 ~ 33562135 (+)
G1366120 NA non-coding downstream 7029 33563694 ~ 33564088 (+)
G1366294 NA non-coding downstream 8690 33565355 ~ 33569634 (+)
G1366302 NA non-coding downstream 13363 33570028 ~ 33570401 (+)
G1366308 NA non-coding downstream 16077 33572742 ~ 33573067 (+)
G1364937 LOC106613263 other upstream 883949 32669696 ~ 32670131 (+)
G1364907 NA other upstream 946947 32606790 ~ 32607133 (+)
G1364768 NA other upstream 1152272 32401434 ~ 32401808 (+)
G1363401 NA other upstream 2318694 31234493 ~ 31235386 (+)
G1362902 fgfr2 other upstream 2598105 30954609 ~ 30955975 (+)
G1366438 NA other downstream 156568 33713233 ~ 33713620 (+)
LOC110491848 morn1 other downstream 560816 34073929 ~ 34154670 (+)
si:ch73-70k4.1 faap20 other downstream 877720 34434347 ~ 34441463 (+)
G1368422 NA other downstream 2186085 35706331 ~ 35779587 (+)
G1368473 yo84 other downstream 2275626 35832291 ~ 35832708 (+)

Expression


Co-expression Network