XLOC_032761


Basic Information

Item Value
gene id XLOC_032761
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17667516 ~ 17668826 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065123
GATTGGTAAAACCAATAAATAGACTTATCCAAATTATGTCGCAGAAAACCCTCTTGCGCAGCCCTTCTCTAAACCTTCTCTGGACAAAAGCTACTTAAGTCAGATTCATGAACTTCCTGTGAAATCTTTCGTTATTATGGATTAAGTGGTGATCACTTGGGTATCTATAAGGTAGTGTTTATGGCACTTCTTTTTTTGCGGGCATACACTTGAGAGTCTGGCCAACTTTCTTCTGTCGCTCTCCCAGTAGTTGGGTAACTTTTGTTGCGTGAGGATACAGTGTTTTAATTGAGAGTGATCACATTATCCATTATCTGATAGTAGACTAGTTTTGTGAAGTTCAGGGGGGTGAATGTAGCCAGTAAGGAAGAGGAATGTTAATTTATTGATAATATTCGGGAATGAACTtcccaaaactaaaaaaaactatgcaTTTATGTATTATATGCCTACCGGGCGTAGGAACCTTATTTCGACACTTGTTTAAGTGGGACCGCAATTAGTGTTGCACGCTTTGCTCTCGGAGAGTGCGGGAGAGTTGCGTCAGCCTCAGTCGGAGTCCAGCCGCTGACGGGGAAAGACGAGTAAAAGTTTCTCCTGCAATTGTGTTTGCATTGTGTGTGTGAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTCCCACATGTGTTTCAGGTATGTTTCATgtaaaactgttttgtgtgaatCTTTTTATGATGTTTTATCATTCTAATTGttctaaaaaattaataattgactatttgaatttgaattgtgcTTTTATGTAATGGTATATTGCATAGTGAATAAGCCTAATTGTTTGAGAAcattatttgctgttttttttgagAATATAAATTTGATCTAGCACTTTGAGTATAATTGTAAAGAGCAACACCActtattttcactttattttttatttcatttaaacaaatacatgtttTTTGTGAGTATTATTGTACCGTGTTATAAAGTCAGCCTCAGTCGGAGTCCAGCCGCTGACGGGGAAAGACGTGTAAAAGTTTCTCCTGCaattgtgtttgcattgtgtgtgtgAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTCCCACATGTGTTTCAGGGACCAATAAATAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTGTGATTATTGGTT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0001706 endoderm formation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0060976 coronary vasculature development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0043951 negative regulation of cAMP-mediated signaling biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010522 regulation of calcium ion transport into cytosol biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1904427 positive regulation of calcium ion transmembrane transport biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065123 True 1178 lncRNA 0.38 2 17667516 17668826

Neighbor

gene id symbol gene type direction distance location
XLOC_032760 NA coding downstream 132041 17534960 ~ 17535475 (-)
XLOC_032759 BX470083.1 coding downstream 151644 17515775 ~ 17515872 (-)
XLOC_032758 BX470083.4 coding downstream 208118 17459301 ~ 17459398 (-)
XLOC_032757 BX470083.2 coding downstream 282387 17385032 ~ 17385129 (-)
XLOC_032756 BX470083.3 coding downstream 312351 17355068 ~ 17355165 (-)
XLOC_032762 NA coding upstream 7366 17676192 ~ 17676959 (-)
XLOC_032763 rptor coding upstream 56962 17725788 ~ 17999776 (-)
XLOC_032764 NA coding upstream 397768 18066594 ~ 18069564 (-)
XLOC_032765 SEC14L1 coding upstream 405695 18074521 ~ 18128721 (-)
XLOC_032766 ppp1r27b coding upstream 528135 18196961 ~ 18199062 (-)
XLOC_032769 BX005286.3 non-coding upstream 597770 18266596 ~ 18267362 (-)
XLOC_032770 NA non-coding upstream 621010 18289836 ~ 18322664 (-)
XLOC_032773 dre-mir-365-3 non-coding upstream 847485 18516311 ~ 18516407 (-)

Expression


Co-expression Network