XLOC_032762


Basic Information

Item Value
gene id XLOC_032762
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 17676192 ~ 17676959 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065124
GTAAAAGTTTCTCCTGCAATTGTGTTTGCATTGGTATGTTTAATATAGTCTGTTCAATTGAAGTTCATATAATGTTGCATAAAATATGTTTAGGATCGTTTTTATTCAGTCAGTTTATAATATTGAGATAAACCTGAGATTTATGCGAGTTTAATATTGTGCACAGTGTGTGTGAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTCCCACATGTGTTTCAGGTATGTTTCATGTAAAACTGTTATGTGTGAATCTTTTTATGATGTTTTATCATTCTAATTGttctaaaaaattaataattgactatttgaatttgaattgtgcTTTTATGTAATGGTATATTGCACAGTGAATAAGCCTAATTGTTTGAGAAcattatttgctgtttttttttgagAATATAAATTTGATCTAGCACTTTGAGTATAAATGTAAAGAGCAACACCActtattttcactttatttttatttcatttaaacaaatacatgtttTTTGTGAGTATTATTGTACAGTGTTATAAAGTCAGCTTCAGTCGGAGTCCAGCCGCTGACAGGGAAAGACGTTTAAAAGTTTCTCCTGCaattgtgtttgcattgtgtgtgtgAAAGGAGAGGAAAGCGTGGAGAGAGTTTCTTATTGAGTGTTCCACATGTGTTTCAGGGACCAATAAATAGATGACGCAAAGCTGTCCTGCTGTTTCCGGTGTGATTATTGGTTATGTACAGATTGGGATCTGCTACATAAAACTGGTGCCGTGA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035239 tube morphogenesis biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048864 stem cell development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0014031 mesenchymal cell development biological_process
GO:0014032 neural crest cell development biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065124 True 768 lncRNA 0.33 1 17676192 17676959

Neighbor

gene id symbol gene type direction distance location
XLOC_032761 NA coding downstream 7366 17667516 ~ 17668826 (-)
XLOC_032760 NA coding downstream 140717 17534960 ~ 17535475 (-)
XLOC_032759 BX470083.1 coding downstream 160320 17515775 ~ 17515872 (-)
XLOC_032758 BX470083.4 coding downstream 216794 17459301 ~ 17459398 (-)
XLOC_032757 BX470083.2 coding downstream 291063 17385032 ~ 17385129 (-)
XLOC_032763 rptor coding upstream 48829 17725788 ~ 17999776 (-)
XLOC_032764 NA coding upstream 389635 18066594 ~ 18069564 (-)
XLOC_032765 SEC14L1 coding upstream 397562 18074521 ~ 18128721 (-)
XLOC_032766 ppp1r27b coding upstream 520002 18196961 ~ 18199062 (-)
XLOC_032767 p4hb coding upstream 526505 18203464 ~ 18228358 (-)
XLOC_032769 BX005286.3 non-coding upstream 589637 18266596 ~ 18267362 (-)
XLOC_032770 NA non-coding upstream 612877 18289836 ~ 18322664 (-)
XLOC_032773 dre-mir-365-3 non-coding upstream 839352 18516311 ~ 18516407 (-)
XLOC_032774 dre-mir-193a-2 non-coding upstream 841011 18517970 ~ 18518067 (-)

Expression


Co-expression Network