G1366456


Basic Information

Item Value
gene id G1366456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 33761830 ~ 33762708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1561334
gccagccaacgagagcgtacaggtcgcaatggtgggtagtatatggggctttggtgacaaaacggattgcactgtgatagactgcatccaatttgttgagtagggtattggaggctattttgtaaatgacatcgccaaagtcgaggattggtaggatggtcagttttacaagggtatgtttggcagcatgagtgaatgtcacgccctggtcgaagtattttgtgtttatctttatttattttgtcaggccagggtgtggcatgggtttttgtatgtggtgtgtatgtatggggattgtagctagtggggtgttctagctaagtctatggctgtctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttgagtttgtcgtgggtgattgtccttagtgtccttgttcctgtctatgtgttttcatcagatagggctgtttaggttttcgttacgttcattacgttctttattttgtagtgtttgtattgatttgtGTTTTACATTTggttattaaaacatggatcgcaatctacacgctgcagtttggtccgactctccttcactataTGAAAGCCGTTacagtgaaggatgctttgttgcgaaataggaagcaaattctagatttaactttggattggagatgtttgatatgggtctggaaggagagtttacagtctaaccagacacctaagtatttgtagttgtccacgtattctaagtcagagccgtccagagtagtgatgttggacaggcgggtaggtgtaggtagcgatcggttgaagagcatgcatttagttttacttgtatttaagagcaattggaggccacggaaggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1561334 True 879 lncRNA 0.43 1 33761830 33762708

Neighbor

gene id symbol gene type direction distance location
LOC110491842 mthfr coding upstream 13947 33721265 ~ 33747883 (+)
anp anp coding upstream 120624 33639604 ~ 33641206 (+)
nppb nppb coding upstream 125256 33635561 ~ 33636574 (+)
vnp vnp coding upstream 127922 33632256 ~ 33633908 (+)
nppal LOC106567368 coding upstream 134041 33626677 ~ 33627789 (+)
LOC110491844 LOC106567364 coding downstream 42823 33805531 ~ 33833968 (+)
plch2a LOC106572832 coding downstream 103970 33866678 ~ 34050946 (+)
si:ch211-251b21.1 LOC106567361 coding downstream 293065 34055773 ~ 34064004 (+)
LOC110491848 morn1 coding downstream 311221 34073929 ~ 34154670 (+)
si:ch73-70k4.1 faap20 coding downstream 671639 34434347 ~ 34441463 (+)
G1366447 NA non-coding upstream 1946 33759555 ~ 33759884 (+)
G1366431 NA non-coding upstream 54548 33707082 ~ 33707282 (+)
G1366429 NA non-coding upstream 59802 33693316 ~ 33702028 (+)
G1366428 LOC106569561 non-coding upstream 60155 33692769 ~ 33701675 (+)
G1366426 NA non-coding upstream 72367 33689214 ~ 33689463 (+)
G1366457 NA non-coding downstream 439 33763147 ~ 33763416 (+)
G1366506 NA non-coding downstream 42272 33804980 ~ 33805325 (+)
G1366548 NA non-coding downstream 165156 33927864 ~ 33928080 (+)
G1366562 NA non-coding downstream 202425 33965133 ~ 33965339 (+)
G1366438 NA other upstream 48210 33713233 ~ 33713620 (+)
G1364937 LOC106613263 other upstream 1091699 32669696 ~ 32670131 (+)
G1364907 NA other upstream 1154697 32606790 ~ 32607133 (+)
G1364768 NA other upstream 1360022 32401434 ~ 32401808 (+)
G1363401 NA other upstream 2526444 31234493 ~ 31235386 (+)
G1368422 NA other downstream 1980042 35706331 ~ 35779587 (+)
G1368473 yo84 other downstream 2069583 35832291 ~ 35832708 (+)
LOC110491910 LOC108432721 other downstream 4651149 38390387 ~ 38416472 (+)

Expression


Co-expression Network