XLOC_032764


Basic Information

Item Value
gene id XLOC_032764
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18066594 ~ 18069564 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065126
tatatattctttattcTTGTATGAAATACCCCGCATATGGCACATATACTTACTGTATGCATACTGTATATGCACTTCATTCTGCCATATCATAATTCATTTAGGTCAGTAGGCGGGCTTCTGCAATAACTTAGAACAAAAGGTTTATTTGAATTTTGGAGACTAGGTCAAGTCTTTTTGGGTGCTACAAGTTTCTTCGTTATTAGACTTGCAGTTTGCACACAGCACGCAATTGAGTGATAGAGTCACATTACATTTTTAGTACTTATTATAACTATAGCTATCTTAAATTTTCACATTGTGGAAATGCTTTCATATTGAACCTCATACCTGCTTGATCAGTTCCTATGCAGTCAGCCTATTAGTGCTTAAATTGAAATTTTTAAATGGTAATTTCTTAGGAGAGATGAATTGTAACTTTGTTGTAAAAATTGTCATTGCCTCAACAGAACAAGTttcaaaatatacagtttttGAAGCTGATCAGTTTTTTTATGGttgtcagtcttttttttttttttttttttttaggtttatggTTTATATTACCAGAGACATGAAATGGAGTGAAGTTACAGAATCCAGTGAATTATACACCTAAAGTTTATTTGTTTAGGTTAGAATGTCAttccaaaattatatatataaaaaaaaaaaaactttttcatgaGAACGTATTTATGAATACAGGGGATttaacatattttacactatgCACAATGGTGTTAACTGCTTATTCTCCTTAATATAGCCCAATTGTCTGAAGACATTTCTCAATTTCTCAGCCTTATCAGTCCTGACCCCAGAGACAGGGCATTTTAggggaaaaatatttttacagcGAGCAAAAGCTACTTTTTTCAGGTCATTTAAATAATGTGATTCatagttaaatatatttacaaagcACTAGTGTATTGTAGGTACTATATACTCTAAACAACATTGATTGTAGAAAAGAGGGACaacaaaaagtgtttaaaaaagttACTATATTCCAGCTGTTATGTTTAAACGCTGTTATTTTTTCTGTTAGACGGGTGTTTATTCAAAAAACTTTAAAGGGATTTAGGGGACCCCAGAAGTTATATATTAAGCAGTCATCCCTTAATGTATTAACACTCATAAAGCACAAGTTCTGAACCATGTTTATTTTCCCTCAAGTTCCCTTGTCATTCTACAAGCTgccagtcaggtttcagggctgtGGTTTTAGAATTTTTTCTAACCATGCACAGGTTAGTACACATATGCTTAGTGTTTAGAAAAAAACATATTCTATTTACAATACAATTTTGTAATCATTACAAAATTAGGGCAAAAAATTAACATAAGACCATCAGTACTAACCATTTATTGTTTTGCTGTATAGAAAGTTCTGTATATCTTGTATGAATGTTTCTCGTCCTTCAATAACCAGTTTTCTTTTCATCAAAATACAGTATATCAGAAGTAAATTTGTGTGTTTGACACTGTTGACTTAGATTAGACacttaggtaacactttattttgatggtccatttgagtattagtagactgtctgcttaatatctgctgatactgctccttcaacagacatttaactgactataagaaactttgcaagtacatttcttcttacactaaccctaaccctaattccaacctaacagtctacttgtaatcttataagaattagtttgcatgtacatgcaatgtaacttagttcaacaaacagaccatcaaaataaagaaaatgtgacCGACACTTGTAGTCTGCCTTTATCTGAACAGAGCAATATGGGAGATAAGTAAACATGTGCACCAATATTCTTACCGAGTAAGTAAGGCTTAGAATGTTAAGAAATTAGAAGAATCAACTAATTGACCAAAATAAAGGcgtttgagtttctttatctTAGTAGAATTTACCTTTACTGTGCAGTAATAATGCTCAGCATAAAAACTCCATCTTGGATTATGTCTGAAAATCACCAGCTGTTTTTTGTGGTTTCGTCTGTGTAAAAGGGCTATGAATTGTTTATTTCTGTCTGTTGTTTCTCCCTGtgcttgtattttatttttgagatGCATATCTGTTTTTTCTGCTGATAAAAtctgtatgtaaaaaaataagtatacAAATGTACTGCctacattttttattcaaattattaaacTTGAATTTAAGTTCATGCTGTGTTTTTGCTTCGTCTTTACAGTGTATGAGCAGAGCCGACCCTCCACATAAGCAAATTAAGTGGCTGATTAGGACCCCGCCCCGACTAGAGGGCCCCCACAACCCACTGGTGGTGCAAACTGTTTACTTGCTGAAatcgtttttatttacattttacaaattatcTTCATTGGTGGTGTTTTAGTGCTTTTTTACTGAAAAGACAGTTACAATTTTTCTCGTGTGAAGGTCATGACCAACAGGAAACTCGCAGCATCTCATTTCCAATATGTGTTTTGTTTGCATGGTCCGAGTTTGTTTTTCCATGGAGAAAATAAGAAAGCCAGTTAGTGCTGGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCACTTGAAGAACCAGGAGAAAAAAAGCCAGTTTGGAAGTGCTAGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCATCTAAAGAACCAGGAGAAAAAAGCATGTTAAAAAAGCTGCTAGTA
>TCONS_00065127
CAGCCACAGTGtcttttttttttttttttttttttaggtttatggTTTATATTACCAGAGACATGAAATGGAGTGAAGTTACAGAATCCAGTGAATTATACACCTAAAGTTTATTTGTTTAGGTTAGAATGTCAttccaaaattatatatataaaaaaaaaaaaactttttcatgaGAACGTATTTATGAATACAGGGGATttaacatattttacactatgCACAATGGTGTTAACTGCTTATTCTCCTTAATATAGCCCAATTGTCTGAAGACATTTCTCAATTTCTCAGCCTTATCAGTCCTGACCCCAGAGACAGGGCATTTTAggggaaaaatatttttacagcGAGCAAAAGCTACTTTTTTCAGGTCATTTAAATAATGTGATTCatagttaaatatatttacaaagcACTAGTGTATTGTAGGTACTATATACTCTAAACAACATTGATTGTAGAAAAGAGGGACaacaaaaagtgtttaaaaaagttACTATATTCCAGCTGTTATGTTTAAACGCTGTTATTTTTTCTGTTAGACGGGTGTTTATTCAAAAAACTTTAAAGGGATTTAGGGGACCCCAGAAGTTATATATTAAGCAGTCATCCCTTAATGTATTAACACTCATAAAGCACAAGTTCTGAACCATGTTTATTTTCCCTCAAGTTCCCTTGTCATTCTACAAGCTgccagtcaggtttcagggctgtGGTTTTAGAATTTTTTCTAACCATGCACAGGTTAGTACACATATGCTTAGTGTTTAGAAAAAAACATATTCTATTTACAATACAATTTTGTAATCATTACAAAATTAGGGCAAAAAATTAACATAAGACCATCAGTACTAACCATTTATTGTTTTGCTGTATAGAAAGTTCTGTATATCTTGTATGAATGTTTCTCGTCCTTCAATAACCAGTTTTCTTTTCATCAAAATACAGTATATCAGAAGTAAATTTGTGTGTTTGACACTGTTGACTTAGATTAGACacttaggtaacactttattttgatggtccatttgagtattagtagactgtctgcttaatatctgctgatactgctccttcaacagacatttaactgactataagaaactttgcaagtacatttcttcttacactaaccctaaccctaattccaacctaacagtctacttgtaatcttataagaattagtttgcatgtacatgcaatgtaacttagttcaacaaacagaccatcaaaataaagaaaatgtgacCGACACTTGTAGTCTGCCTTTATCTGAACAGAGCAATATGGGAGATAAGTAAACATGTGCACCAATATTCTTACCGAGTAAGTAAGGCTTAGAATGTTAAGAAATTAGAAGAATCAACTAATTGACCAAAATAAAGGcgtttgagtttctttatctTAGTAGAATTTACCTTTACTGTGCAGTAATAATGCTCAGCATAAAAACTCCATCTTGGATTATGTCTGAAAATCACCAGCTGTTTTTTGTGGTTTCGTCTGTGTAAAAGGGCTATGAATTGTTTATTTCTGTCTGTTGTTTCTCCCTGtgcttgtattttatttttgagatGCATATCTGTTTTTTCTGCTGATAAAAtctgtatgtaaaaaaataagtatacAAATGTACTGCctacattttttattcaaattattaaacTTGAATTTAAGTTCATGCTGTGTTTTTGCTTCGTCTTTACAGTGTATGAGCAGAGCCGACCCTCCACATAAGCAAATTAAGTGGCTGATTAGGACCCCGCCCCGACTAGAGGGCCCCCACAACCCACTGGTGGTGCAAACTGTTTACTTGCTGAAatcgtttttatttacattttacaaattatcTTCATTGGTGGTGTTTTAGTGCTTTTTTACTGAAAAGACAGTTACAATTTTTCTCGTGTGAAGGTCATGACCAACAGGAAACTCGCAGCATCTCATTTCCAATATGTGTTTTGTTTGCATGGTCCGAGTTTGTTTTTCCATGGAGAAAATAAGAAAGCCAGTTAGTGCTGGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCACTTGAAGAACCAGGAGAAAAAAAGCCAGTTTGGAAGTGCTAGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCATCTAAAGAACCAGGAGAAAAAAGCATGTTAAAAAAGCTGCTAGTA
>TCONS_00065128
ttttttttttttacctcagggGCTCAATGACCAGTCTGGAGTCCAGCCACAGTGGTTTCTCTCAGCTCAGTGCAGCCACCACATCCTCAAGCCAATCTCAGTCCAGCTCTATGATCTCCAGgtttatggTTTATATTACCAGAGACATGAAATGGAGTGAAGTTACAGAATCCAGTGAATTATACACCTAAAGTTTATTTGTTTAGGTTAGAATGTCAttccaaaattatatatataaaaaaaaaaaaactttttcatgaGAACGTATTTATGAATACAGGGGATttaacatattttacactatgCACAATGGTGTTAACTGCTTATTCTCCTTAATATAGCCCAATTGTCTGAAGACATTTCTCAATTTCTCAGCCTTATCAGTCCTGACCCCAGAGACAGGGCATTTTAggggaaaaatatttttacagcGAGCAAAAGCTACTTTTTTCAGGTCATTTAAATAATGTGATTCatagttaaatatatttacaaagcACTAGTGTATTGTAGGTACTATATACTCTAAACAACATTGATTGTAGAAAAGAGGGACaacaaaaagtgtttaaaaaagttACTATATTCCAGCTGTTATGTTTAAACGCTGTTATTTTTTCTGTTAGACGGGTGTTTATTCAAAAAACTTTAAAGGGATTTAGGGGACCCCAGAAGTTATATATTAAGCAGTCATCCCTTAATGTATTAACACTCATAAAGCACAAGTTCTGAACCATGTTTATTTTCCCTCAAGTTCCCTTGTCATTCTACAAGCTgccagtcaggtttcagggctgtGGTTTTAGAATTTTTTCTAACCATGCACAGGTTAGTACACATATGCTTAGTGTTTAGAAAAAAACATATTCTATTTACAATACAATTTTGTAATCATTACAAAATTAGGGCAAAAAATTAACATAAGACCATCAGTACTAACCATTTATTGTTTTGCTGTATAGAAAGTTCTGTATATCTTGTATGAATGTTTCTCGTCCTTCAATAACCAGTTTTCTTTTCATCAAAATACAGTATATCAGAAGTAAATTTGTGTGTTTGACACTGTTGACTTAGATTAGACacttaggtaacactttattttgatggtccatttgagtattagtagactgtctgcttaatatctgctgatactgctccttcaacagacatttaactgactataagaaactttgcaagtacatttcttcttacactaaccctaaccctaattccaacctaacagtctacttgtaatcttataagaattagtttgcatgtacatgcaatgtaacttagttcaacaaacagaccatcaaaataaagaaaatgtgacCGACACTTGTAGTCTGCCTTTATCTGAACAGAGCAATATGGGAGATAAGTAAACATGTGCACCAATATTCTTACCGAGTAAGTAAGGCTTAGAATGTTAAGAAATTAGAAGAATCAACTAATTGACCAAAATAAAGGcgtttgagtttctttatctTAGTAGAATTTACCTTTACTGTGCAGTAATAATGCTCAGCATAAAAACTCCATCTTGGATTATGTCTGAAAATCACCAGCTGTTTTTTGTGGTTTCGTCTGTGTAAAAGGGCTATGAATTGTTTATTTCTGTCTGTTGTTTCTCCCTGtgcttgtattttatttttgagatGCATATCTGTTTTTTCTGCTGATAAAAtctgtatgtaaaaaaataagtatacAAATGTACTGCctacattttttattcaaattattaaacTTGAATTTAAGTTCATGCTGTGTTTTTGCTTCGTCTTTACAGTGTATGAGCAGAGCCGACCCTCCACATAAGCAAATTAAGTGGCTGATTAGGACCCCGCCCCGACTAGAGGGCCCCCACAACCCACTGGTGGTGCAAACTGTTTACTTGCTGAAatcgtttttatttacattttacaaattatcTTCATTGGTGGTGTTTTAGTGCTTTTTTACTGAAAAGACAGTTACAATTTTTCTCGTGTGAAGGTCATGACCAACAGGAAACTCGCAGCATCTCATTTCCAATATGTGTTTTGTTTGCATGGTCCGAGTTTGTTTTTCCATGGAGAAAATAAGAAAGCCAGTTAGTGCTGGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCACTTGAAGAACCAGGAGAAAAAAAGCCAGTTTGGAAGTGCTAGTATAGATCAGGAAAATGTAGAAACTGGAGCCACTGCAGGAGAGTTACCATCTAAAGAACCAGGAGAAAAAAGCATGTTAAAAAAGCTGCTAGTA

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:1902600 proton transmembrane transport biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0046034 ATP metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:2000736 regulation of stem cell differentiation biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0007275 multicellular organism development biological_process
GO:0022900 electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065126 False 2701 lncRNA 0.33 1 18066594 18069294
TCONS_00065127 False 2207 lncRNA 0.34 2 18066594 18069521
TCONS_00065128 True 2291 lncRNA 0.35 2 18066594 18069564

Neighbor

gene id symbol gene type direction distance location
XLOC_032763 rptor coding downstream 66818 17725788 ~ 17999776 (-)
XLOC_032762 NA coding downstream 389635 17676192 ~ 17676959 (-)
XLOC_032761 NA coding downstream 397768 17667516 ~ 17668826 (-)
XLOC_032760 NA coding downstream 531119 17534960 ~ 17535475 (-)
XLOC_032759 BX470083.1 coding downstream 550722 17515775 ~ 17515872 (-)
XLOC_032765 SEC14L1 coding upstream 4957 18074521 ~ 18128721 (-)
XLOC_032766 ppp1r27b coding upstream 127397 18196961 ~ 18199062 (-)
XLOC_032767 p4hb coding upstream 133900 18203464 ~ 18228358 (-)
XLOC_032768 anapc11 coding upstream 174656 18244220 ~ 18250857 (-)
XLOC_032769 BX005286.3 coding upstream 197032 18266596 ~ 18267362 (-)
XLOC_032758 BX470083.4 non-coding downstream 607196 17459301 ~ 17459398 (-)
XLOC_032770 NA non-coding upstream 220272 18289836 ~ 18322664 (-)
XLOC_032773 dre-mir-365-3 non-coding upstream 446747 18516311 ~ 18516407 (-)
XLOC_032774 dre-mir-193a-2 non-coding upstream 448406 18517970 ~ 18518067 (-)
XLOC_032783 CR925723.1 non-coding upstream 1068277 19137841 ~ 19138634 (-)

Expression


Co-expression Network