XLOC_032770


Basic Information

Item Value
gene id XLOC_032770
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 18289836 ~ 18322664 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065129
AAACAGCATGCTCCTGTGCTTGTACATCTCACAGTCCACGGTCAACTTTGCCACCTCCAAAGCCAAAGAGTTCTTCTCTTCTAAGAGCTTAACATGTGAAGAAAGGGGAATGGTATTATGTATTTCTGTGCTCACTGGCTGTTTGGACATTCACCATGGAGGTGTTCTGCCAGTATGCTGTTCATCCTGTGGAGTGTGCTGTGGTGCTGAGGGTATTCTTGAGCCAAACGCTGGAGGCTCCAATGCTGTGACTCCAGTTGCCATTGGTGTGTACCGTCCCTCCTTAACAGCATGCAGGTGTTTGGCCCGAGTCTGCAGCACGGGCAGACGATACAAATTCTGCAGAAGTGACCACAGAATCATGGGTGACAGACTTAAACATCAGATAGTTACAAAACATTAGTTAAACATAAGATTGTTTAGGACCTACATCTTAATTCCAAAAGGACCCTGCCCATAAATGTTCTCTTACACAAGTATTTGTATTGTAATTCAACAATTGCTGCCTTTTTTCTTGCATTTGTTATTCTTTGAATCTTATAAAAAATATGTCTATGTAAAGCTATTTTGTAAGCATGAATGTAAACACTTGCTGCTGTGATGTGACATTAGTGTGGAATAGAatgaatttatttaacaatgaTATCGATAATTTTGTAAAATGGAGAGCTCCTATGTTGGAGTATCATAGTGTCCAGTATGCAAGTGTGTGATTTATGCTGTTGGTGGATGCACTCACTCTCTCTTTAATTTCTTGTAGTCTGCGGAGATCCTGGGAGAGAAATGCTTCGGTATTCTGTATGTTATTGAGATGCATTTGTTTGTCTTGAAGTCTGGATGTCATAGAGCCCAGCCTCTCCTCCAGTTGAGCTATAACACCATCACACTCTTCAGTTtgctaaacacacaaacaaacatagtatgttagaacagaatagaacagactTAGATACAACATAAACCCAGCATCTGCATACTAGTCAACATAAAATGTTTCCAGATCTTCTGACTTAAATCGCCATTTCGATttaatttgcaatttaatttaataaccaACTCAATATTCTCAGTAGTGTGCTGCACACACTTTGAATGAAAAGAATACAACATGCTTTAACTGTACATAAAAATATGGTGTACAATAATGTACTAGTTTGAGTTagttagttaatgtttttactaTGGGTGTGACGAGATGATTACTCCATGAGACGAGACGCTagatttttacactatttttaagaaatcttcagtgatgaaatatataaatggaaaatagtcttttattcaactaaaaaaaaaaaatcacaaattgcaAAACTATTTAGGTTTAGGTgctttttaattaaatgtgtaaTAAGTGTTATTTTACTCCATAGCAAGcactgcaaaatattttgcaaataGCCTGTGTGAAtggaa
>TCONS_00063756
TGTATTTCTGTGCTCACTGGCTGTTTGGACATTCACCATGGAGGTGTTCTGCCAGTATGCTGTTCATCCTGTGGAGTGTGCTGTGGTGCTGAGGGTATTCTTGAGCCAAACGCTGGAGGCTCCAATGCTGTGACTCCAGTTGCCATTGGTGTGTACCGTCCCTCCTTAACAGCATGCAGGTGTTTGGCCCGAGTCTGCAGCACGGGCAGACGATACAAATTCTGCAGAAGTGACCACAGAATCATGGGTGACAGACTTAAACATCAGATAGTTACAAAACATTAGTTAAACATAAGATTGTTTAGGACCTACATCTTAATTCCAAAAGGACCCTGCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000101871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065129 False 1422 lncRNA 0.37 3 18289836 18322664
TCONS_00063756 True 338 lncRNA 0.48 2 18290802 18292046

Neighbor

gene id symbol gene type direction distance location
XLOC_032769 BX005286.3 coding downstream 22474 18266596 ~ 18267362 (-)
XLOC_032768 anapc11 coding downstream 38979 18244220 ~ 18250857 (-)
XLOC_032767 p4hb coding downstream 61478 18203464 ~ 18228358 (-)
XLOC_032766 ppp1r27b coding downstream 90774 18196961 ~ 18199062 (-)
XLOC_032765 SEC14L1 coding downstream 161115 18074521 ~ 18128721 (-)
XLOC_032771 si:dkey-31g6.6 coding upstream 41384 18364048 ~ 18366339 (-)
XLOC_032772 trim25 coding upstream 65663 18388327 ~ 18400623 (-)
XLOC_032773 dre-mir-365-3 coding upstream 193647 18516311 ~ 18516407 (-)
XLOC_032774 dre-mir-193a-2 coding upstream 195306 18517970 ~ 18518067 (-)
XLOC_032775 utp6 coding upstream 201780 18524444 ~ 18531760 (-)
XLOC_032764 NA non-coding downstream 220272 18066594 ~ 18069564 (-)
XLOC_032762 NA non-coding downstream 612877 17676192 ~ 17676959 (-)
XLOC_032761 NA non-coding downstream 621010 17667516 ~ 17668826 (-)
XLOC_032760 NA non-coding downstream 754361 17534960 ~ 17535475 (-)
XLOC_032783 CR925723.1 non-coding upstream 815177 19137841 ~ 19138634 (-)
XLOC_032784 CR925723.3 non-coding upstream 823760 19146424 ~ 19147218 (-)
XLOC_032792 CR387927.3 non-coding upstream 1070196 19392860 ~ 19392977 (-)

Expression


Co-expression Network