XLOC_032782 (si:rp71-81e14.2)


Basic Information

Item Value
gene id XLOC_032782
gene name si:rp71-81e14.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19040507 ~ 19042294 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063789
AATATCACTCATTTCTGCAATGATGTTGTGTGTCGTGAGATGCAGTTTTCTATTGGTCCTGATCTGTGTAAGATCCTTACGGGCAGCCACAAATTTGAAAGTTACACAGATAACTAGAGCTTGTGGGAAACACATCAGCATTGAGTGCACTACACATAAAAGCCCGCAGAATGGTGTGTACATGTACAAACAAGAAAGAGCAAAAGAACCACAGGAAATCTTCTACTTTTACCAAGAAACCCCTCAGTCAATCACTCTAacctataaacaaataaacaataaagtcATTGTAAGTGGAGTATTACCCAATCTTAACGTCACCATCTTAAACGTAACTGTCACCGACACTGGATTTTACTGGTGTGAGTTTAATTCGGAAGAAAAAATCACTCTTGGCAATATCACTTGGTTATTGATAGAAGAAAATCAAGGGGGAAATGCTGTTAACACATCTAAAGAAATCGGAAAAGAATGCACAGAAGATGCTATTCCACATGTAAAGATCATCCTCATTTTGTGTACTGCAATGTCTCTagtctgcattttgttttttttctgtgtgatTGTTAAGATGAAAGGGTGTTGGAGGAAAAAAATTACATTCACACAATCCAATCCACCCTCAGACTCAGTTTATGAAGAGATGAAACGGAGCAATTTGGATCCCCAGTCCAATGTGCGGACATTCATCAACCCTGACTATCAATCTACAGTACCAAGGATCTGTGATACTGTGAGATAGTGTAAGATCATTGTTTTAGGTAGAATGAATATGACGTGTCTCTAAATACTGTTgatcagtaataataattaaagaaatgcatacttgtataataataattgaaatgcAGCAGTTGAAGAGATATTTTTAGCTGACAAAATGTCAAGTGTC

Function

symbol description
si:rp71-81e14.2 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0002250 adaptive immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-95 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000103077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063789 True 892 mRNA 0.37 4 19040507 19042294

Neighbor

gene id symbol gene type direction distance location
XLOC_032781 sept9b coding downstream 4758 18935815 ~ 19035749 (-)
XLOC_032780 tnrc6c2 coding downstream 288811 18714213 ~ 18751696 (-)
XLOC_032779 rhbdl3 coding downstream 341838 18623492 ~ 18698669 (-)
XLOC_032778 znf207b coding downstream 422401 18605644 ~ 18618106 (-)
XLOC_032777 cd7al coding downstream 439203 18594977 ~ 18601304 (-)
XLOC_032783 CR925723.1 coding upstream 95547 19137841 ~ 19138634 (-)
XLOC_032784 CR925723.3 coding upstream 104130 19146424 ~ 19147218 (-)
XLOC_032785 si:ch211-188c18.1 coding upstream 121629 19163923 ~ 19168640 (-)
XLOC_032786 zgc:174863 coding upstream 221139 19263433 ~ 19271210 (-)
XLOC_032787 jpt1a coding upstream 252558 19294852 ~ 19305589 (-)
XLOC_032774 dre-mir-193a-2 non-coding downstream 522440 18517970 ~ 18518067 (-)
XLOC_032773 dre-mir-365-3 non-coding downstream 524100 18516311 ~ 18516407 (-)
XLOC_032770 NA non-coding downstream 717843 18289836 ~ 18322664 (-)
XLOC_032769 BX005286.3 non-coding downstream 773145 18266596 ~ 18267362 (-)
XLOC_032764 NA non-coding downstream 970943 18066594 ~ 18069564 (-)
XLOC_032792 CR387927.3 non-coding upstream 350566 19392860 ~ 19392977 (-)
XLOC_032793 NA non-coding upstream 396806 19439100 ~ 19440159 (-)
XLOC_032796 CU929170.1 non-coding upstream 674129 19716423 ~ 19716541 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_01437714_01440420 NA coding CI01000112 null 1437457 ~ 1440508 (-)