XLOC_032785 (si:ch211-188c18.1)


Basic Information

Item Value
gene id XLOC_032785
gene name si:ch211-188c18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19163923 ~ 19168640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063792
AACAACACTTAGAGCTTTAAGGATGATGTGCATTGTAAAATACAGTTTTCTGCTGGTCATGATCTGTTTAAAAAGCTCCTCGTTGGCAGCCACATATCTGAAAGAATTAACTGGAGCTTTGGGGAAAGACACCACCATTGAGTGCACTAATAAACCTGATCAACATGGTGTGTACATGTACAGACAAGAAAAGGCTAGTAAACTGAAGGAAATTGTATACCTTTACAAAGATAACACTCTTACCTATAAAGAAATTAAAGAATCCAAAATCAGAGTAAGTACAGCATTCCCCAACCTAAATGTCACCATCCTAAATGCAACTCTTGACGACGCTGGACTTTATTGGTGTGAATATAATAAAGAAGAAATAATTACCCTTAGCAAATTCACTTTGTTATGGATAGACACAGTGCCAGACCCAAGCCCATTGTGCCCACGCCCGGAGTGTCCTGATACATATTCCTATGTGATCATCATCTTCATTTTGTGTGCTGCTGTGGGTCTACTGTGCTTTTTTGGTTTCTACTGCGTGATTCGGAAGCGGTGTATGGGGAAAAAGCAATTCACACCATCAAATCAATTCTCAGTCCCAGTCTATGAAGAGATGAATCGGAGCAACTTGTCCAATGCAAGGTCATTAATCAACCCTGATTACCAccctataaataaactttaaaacacATGATTGTTACCCATGTAATTGTTCATAGCATAAA

Function

symbol description
si:ch211-188c18.1 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0002250 adaptive immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-296 Predicted to enable signaling receptor activity. Predicted to act upstream of or within adaptive immune response. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000101654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063792 True 716 mRNA 0.39 4 19163923 19168640

Neighbor

gene id symbol gene type direction distance location
XLOC_032784 CR925723.3 coding downstream 16705 19146424 ~ 19147218 (-)
XLOC_032783 CR925723.1 coding downstream 25289 19137841 ~ 19138634 (-)
XLOC_032782 si:rp71-81e14.2 coding downstream 121629 19040507 ~ 19042294 (-)
XLOC_032781 sept9b coding downstream 128174 18935815 ~ 19035749 (-)
XLOC_032780 tnrc6c2 coding downstream 412227 18714213 ~ 18751696 (-)
XLOC_032786 zgc:174863 coding upstream 94793 19263433 ~ 19271210 (-)
XLOC_032787 jpt1a coding upstream 126212 19294852 ~ 19305589 (-)
XLOC_032788 sumo2a coding upstream 137552 19306192 ~ 19313925 (-)
XLOC_032789 gga3a coding upstream 147075 19315715 ~ 19333947 (-)
XLOC_032790 mif4gda coding upstream 165725 19334365 ~ 19341186 (-)
XLOC_032774 dre-mir-193a-2 non-coding downstream 645856 18517970 ~ 18518067 (-)
XLOC_032773 dre-mir-365-3 non-coding downstream 647516 18516311 ~ 18516407 (-)
XLOC_032770 NA non-coding downstream 841259 18289836 ~ 18322664 (-)
XLOC_032792 CR387927.3 non-coding upstream 224220 19392860 ~ 19392977 (-)
XLOC_032793 NA non-coding upstream 270460 19439100 ~ 19440159 (-)
XLOC_032796 CU929170.1 non-coding upstream 547783 19716423 ~ 19716541 (-)
XLOC_032798 BX537296.3 non-coding upstream 967419 20136059 ~ 20136156 (-)
XLOC_032799 BX537296.2 non-coding upstream 1009796 20178436 ~ 20178533 (-)

Expression


Co-expression Network