XLOC_032787 (jpt1a)


Basic Information

Item Value
gene id XLOC_032787
gene name jpt1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19294852 ~ 19305589 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063798
TCGCGTCTAATGGGCGTGTGCAGGAGCGCAGATTCAGCACCGACAGACTGATGACCTGAACAGGAGACGCTCTTTGTGGCTTTATGATAATCTGTCGAATATTGTTGAAAAGCGTGAACAAACTGTGAGTGTTGAAGATGACGACCACCACCACTTATCAAGGCATGGACCCGACCGCGAGGAACAGCTCCAGGGTGCTGCGTCCACCTGGTGGAGGCTCAAATATTTGCTTTGGCACAGATGAAGAGAAacctgtgaaaaaaaataaaatggcatcTAGTATATTTGCCGAACCCGAGGACCCTCATGCCCATCGGAGGAACAATCCACCAGGTGGGAAACCTACAGGTGTGTTGTGTGGAGAACCATCTGCCCCTCTCAGAAGATGTACTGCTCAACCAGTCAACCACAGTAACAGCATGGTTAACAATAATCTACCTGTGAATGGTGAGAATGGTGATGAAGGCCCAATCAGTGTCGATTGCATGGAAGAACCTGAACATTTTCAGGAGCAAAATGAGACAGCAGCTTCTTCTTCTCTGTCCACAACTGAGGAGCCTGCCGCTGGGCTTCCCTCCAGCCGCAGAAACCCACCGGGGGGCAAATCCTCGCTAATCTTAGGTTAAAGAATTGCCTGATTTAAGGTTAAGATCTGGGCCTATGCGAAACGAGCATCTCAGAGTTCATGTGCTGTTCTGTGGTCAGTGCTCATCCTCTGCGTAACTATTTCTAAAATGACAAACTGACTCAAGTCATTCAGATCAGGACAATTTAGTGACTGAAGCATGTCACAAATCTCTGAGCTTGTTCAAAGAATATCTTTGAATGTTTTAAGTGTTGCTGTCTTGGTCTTGTCTTGACTGAATGGCCTTGATAAATGAAGAGCAGATACCGGTTATGCACTGCTACTCTCAGATTCCACAAACCATAGGCCACAATTTGCCATCACAGTTCTGCCATCCAATGCATTTTACCGTCAATGGTCAGCATTTAGTAAGTTAAGCTCCATTCATGTAAGCCTAAAAAATCTCTCCCTTATTCAGTGTCTATGTATTAAGTTTTGTCAGCACTTTATGAACCATGGCGCCCAATTTGTGGTGCCTCAGGCCTGCTGATGAACTATTCTGTATTAAATCCATCACTGCAAACATTTGTAGATGTAAGGAATAAGAATAAACAATAATTTACTGAGTGCTGAAGACAAAAAACATAACATCTGGTTATTCAGTTCCACATTAAATCATTGCTTGTGCAAACAGGAACGTGGTTAAAAGAGCAACAACCTGAGAGTGCAATGAAATGTTCTAATCAAGAACAGGTGTGCCAGAAAAGGTGCATGTGAGCAAGCTATTGTGTTTGTTACAGAACATAAAGTAATAAAATGTGTACACGAGTACAAACAA

Function

symbol description
jpt1a Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-142 Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human JPT1 (Jupiter microtubule associated homolog 1).

Ensembl:

ensembl_id ENSDARG00000099387

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063798 True 1403 mRNA 0.44 5 19294852 19305589

Neighbor

gene id symbol gene type direction distance location
XLOC_032786 zgc:174863 coding downstream 23642 19263433 ~ 19271210 (-)
XLOC_032785 si:ch211-188c18.1 coding downstream 126212 19163923 ~ 19168640 (-)
XLOC_032784 CR925723.3 coding downstream 147634 19146424 ~ 19147218 (-)
XLOC_032783 CR925723.1 coding downstream 156218 19137841 ~ 19138634 (-)
XLOC_032782 si:rp71-81e14.2 coding downstream 252558 19040507 ~ 19042294 (-)
XLOC_032788 sumo2a coding upstream 603 19306192 ~ 19313925 (-)
XLOC_032789 gga3a coding upstream 10126 19315715 ~ 19333947 (-)
XLOC_032790 mif4gda coding upstream 28776 19334365 ~ 19341186 (-)
XLOC_032791 grb2a coding upstream 39160 19344749 ~ 19381993 (-)
XLOC_032792 CR387927.3 coding upstream 87271 19392860 ~ 19392977 (-)
XLOC_032774 dre-mir-193a-2 non-coding downstream 776785 18517970 ~ 18518067 (-)
XLOC_032773 dre-mir-365-3 non-coding downstream 778445 18516311 ~ 18516407 (-)
XLOC_032770 NA non-coding downstream 972188 18289836 ~ 18322664 (-)
XLOC_032793 NA non-coding upstream 133511 19439100 ~ 19440159 (-)
XLOC_032796 CU929170.1 non-coding upstream 410834 19716423 ~ 19716541 (-)
XLOC_032798 BX537296.3 non-coding upstream 830470 20136059 ~ 20136156 (-)
XLOC_032799 BX537296.2 non-coding upstream 872847 20178436 ~ 20178533 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G485367 NA non-coding CI01000340 null 24577 ~ 27955 (+)