Fish Transcriptome and Expression Database

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model fish

XLOC_032792 (CR387927.3)

Basic Information

Item	Value
gene id	XLOC_032792
gene name	CR387927.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	19392860 ~ 19392977 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063808
TGCAAGAGCCATATCACGCTGCAGCCCAAGGCCGGTTTACTCACTGAACCTAAGTAGGACTGAGACTGGTCAGTACCTaaataggagaccacatgggaaaactagcttgcggttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000114634

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00063808	True	118	rRNA	0.50	1	19392860	19392977

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_032791	grb2a	coding	downstream	10867	19344749 ~ 19381993 (-)
XLOC_032790	mif4gda	coding	downstream	51674	19334365 ~ 19341186 (-)
XLOC_032789	gga3a	coding	downstream	58913	19315715 ~ 19333947 (-)
XLOC_032788	sumo2a	coding	downstream	78935	19306192 ~ 19313925 (-)
XLOC_032787	jpt1a	coding	downstream	87271	19294852 ~ 19305589 (-)
XLOC_032793	NA	coding	upstream	46123	19439100 ~ 19440159 (-)
XLOC_032794	usp43a	coding	upstream	88417	19481394 ~ 19665114 (-)
XLOC_032795	cfap52	coding	upstream	274642	19667619 ~ 19683406 (-)
XLOC_032796	CU929170.1	coding	upstream	323446	19716423 ~ 19716541 (-)
XLOC_032797	ntn1a	coding	upstream	411071	19804048 ~ 19926657 (-)
XLOC_032784	CR925723.3	non-coding	downstream	245642	19146424 ~ 19147218 (-)
XLOC_032783	CR925723.1	non-coding	downstream	254226	19137841 ~ 19138634 (-)
XLOC_032774	dre-mir-193a-2	non-coding	downstream	874793	18517970 ~ 18518067 (-)
XLOC_032773	dre-mir-365-3	non-coding	downstream	876453	18516311 ~ 18516407 (-)
XLOC_032770	NA	non-coding	downstream	1070196	18289836 ~ 18322664 (-)
XLOC_032798	BX537296.3	non-coding	upstream	743082	20136059 ~ 20136156 (-)
XLOC_032799	BX537296.2	non-coding	upstream	785459	20178436 ~ 20178533 (-)
XLOC_032800	NA	non-coding	upstream	808351	20201328 ~ 20360733 (-)

Expression

Co-expression Network