XLOC_032794 (usp43a)


Basic Information

Item Value
gene id XLOC_032794
gene name usp43a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19481394 ~ 19665114 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063809
ATGGATTCGCTGAGGGAAACCAGGAAACAAACAATCAAAGCTAAATCGGCGAAGCGCAAGAACAAAACGCACAAGTCCCAAAAGCTGTTCCGAAGGAAATCGTTAAAATCGCTGGGAAATTTTATGAGCAGGATTGTCAAAACTTTGGGCACTTTGGCACACTTGGGGGACGCGGATCAGCCGGACGCAGCAGCGGAGGATGATGATGGTGGATTTGGAGACACGGCGAGTGTCCACAACTCTGGGAACTACAGAGAGAGCTCGGCGAGGAAAAGCTCTTCTTACGGGTCTGTGAAAGAAAGACTGTCCTGGTGTTACGGAGAGAAAACACCGGGAGTTCAGGGTCTGAAGAATCACGGAAACACCTGTTTTATGAACGCTGTGGTGCAGTGTCTGAGTAACACAGAACTTCTGGCTGAATATCTGGGTCTGGAGCagtataaatatgaattaaatgagCGGAGGATCAACGGGATGATGAAGAGTGAGGAGGTCAGAGGGGAAGTCACGGACAAGCTGGCATCGTTAGTAAGGGCGCTCTGGACAAACGACTACACGCCTCAGCTGTCGGTGGATTTTAAGAGTGTTGTGGCCAAGTATGGCTCTCAGTTCAAAGGAAACGCTCAACATGATGCTTTAGAGTTTCTGCTCTGGCTTCTGGATTGTGTGCATGAGGACGCTAACCTCTCCACCAACAACAACCAAAGCAGAAATAGTTCATCCAGCAAGCCCGGAACTCGACACAGTTTTGTACAGGAGCACTTCCAAGCCCAGTACAGGTCATCCTTGACATGCCCGCATTGCCTTAAACAGAGCAACACTTTTGACCCTTTCCTGTGTATTTCCCTTCCAATCCCGCTGCGACAGACCAGGGCCCTGAATGTGACTCTGGTGTTCAGCACAGAAGGTCAGCGGTTTCTGAGAATAGGGCTGGCTGTGCCTCTCTTTGGGTCTATTTCAACACTCAGGGCCATGGTAGCAGAGGAGGGCAAGCTCTCTCCAGACCAGgTAATTTTGACAGAGATGAACTCGGGTGGGTTCCAGCGCTCTTTCTCTGATGAAGATGACATGACCAGTATATCAGAGAGTGATGTCATCTACGCCTTCCAGGTTCCCCCTCACTTCACCAGAGGAGGTTCCATGCGGTTCTCAGATTTCAAAGGTCACAGGCTACCGCCATCAGGGACGTTATCAACAGAATTCTTGAATCATGGGGGCTCTTCAAAAGTCCTTCTCTTAATCTGCAATGTTGCTGGCTCTGGCCAACAGGCTACAAGGTTCGGGCCACCATTTCTGATGAGAGTAGAAAGGACTCTTTCTTGGGATCATCTGCAACAGAGTGTCTGCAATAAGCTTTACGTTTTTCAAAAAACTGCAATAATAAAGGTTAGTACTACTGAACTGTTTAAAGTGCGTGTGGTGGGTGGATCAGCCTCCTGCAGTTATCTGTCTCCGCACGACAGCAGACCTCTGTGCCATCCCACCGTAGACAGAGCCCTCAAGTTATGTGGTCCAGGTGGTCCTTTGCATGTGAAGCTCATAATTGAATGGGACAACAAAATTAAAGAATGCCTCTTTGGCAATATTCAAGAGGAGGTGATTGAGGATGCAGAGAGTGTGAGAATCCAGCAGCAGAATCATGTACAACAGCACAGCTGCACACTGGATGACTGTTTTCAGCTCTACACCAAAGAGGAGCAGCTGGCACCAGACGATGCATGGAAGTGCCCCCACTGTAAGCAAATGCAGCAGGGAATGGTGAAGATGAGTTTATGGACACTGCCCGACATCCTCATTCTGCACCTGAAGCGTTTTCGACAGGTGGGCAAACGGCGAAACAAGCTCTCCACCCTCATTCGCTTTCCTGTAAGTGCTCTGGATATGACCCCCCATGTGGTGAAACGCAGTCAAAGCATGAAGAATCTGGCCCCGTTGCCTTCAACTTGGAAGCATGGAGAAACTGACTTTCTTTATGACTTGTATGCAGTTTGCAACCACCACGGAGGCATGCATGGAGGCCATTACACAGCCTATTGCAGGAACTCCGTGGACGGCCACTGGTACAGTTATGATGACAGCAGTGTGGAGATTGTGCCAGAGGAGGAACTGTGCACACGAGGGGCTTATATCCTGTTCTACCAGAGGAGAAATGTCATCCCACCCTGGTCTGCCAACAGCTCGGTCAGAGGTTCCACCAGCTCCTCGATGTCAGATCACTGGCTCATCCGTTTGAATGGTGACAGTAAAAGAGGAAGTATGGTTTCACGGTCTTCTACAACATGCCCTTCTTCCATCGCTGACTCCCCAGAGTCAccagtttttaaaaatgaaccCTCAATTGAGGAAAGAGGTGGGTTTGAAAGCAGACCTTTTGTGCGAGGAATCCAAGGTCGTAGTGTAAGCATGAGAAGTCCCACCAAGAGTAAAGTGCTCCCACTGCGATGGTCTTTTGGAAATAAAGACCGCCACAAACCTGTGCCGGCTTCTGAGCAGTCTCCTGCAGAACTGGTGGAGTATTTAGAGTCTGGGAGGAGACCAAGATGTACCAAAGACCCTATTGTTTCCCTAATGACTCGACCTTCAGACAAAGACAACGATGCAAAAAAAACAGCCAAATCTTCCAGCCACAGTGGCCTCAGACCTCCAGAATATCTGAAAATACCACAGGGTCAAGAAAGAAGTAGCTCAGAGAAAGCAATGGGCCAACAACCTGCCAGCAGCAGTAGATCAAGAGAAGAAGGGACCTTGACCAGACGGAGCAGCAGAAAATCTAAACCGGACCAATCACACTCCAGGAAGAGCTCTGGAGCAGGGATCCAGTCCAGTTGTAGTACTCCAAGTGGCTGGGAAACAGCACAGAAGCATGAGTCGAGTGACAAGCGTGACCAATCAGAGGATAAACATAAAAAAGGGCAGGAGACTAAACGTCATGATGTCTTCGCTTTTCTCAAAGGTGGCTTTATCAAGAAGGATTCCCTTCGGAAGTCTCGGGATAATGATTCTGTCAAAAAGGCTGATTCAGGGGTGAAGAGCCCATCTGGAGTTTCCCTCTCCAACGGGACACATAATAAAAATCCAGAAGGTAAAGTCAGTACTATGAACCATGGTAGCAGGCACGGAAGTGAACTGGCAAATGGCAAGGTGAGTCGTGGTTCCTCAGACATCAAACGCTCACAAAGCTCATCCAATATTCAAAGCAAAACTGATCTAGGCTTAAGAAGAACAGCATCTTTACACAGAAACGGCACATCGGTGGCCCAACCACAGAGCGTGACAGGGGACAGGGGCTCTCAGAGCACTTTACAACGCACACGCTACAGCACAAACTCACTGGGCAGAAAGAAGGCAGTGCCTGAATCAAGTTTCTAA
>TCONS_00063810
GTGTATTTCCAGGTGCGTACGAGAGCGTCATGGATAAATCGAAAGTAGCGCAGCAGAGAACAGCGATAAGGAATGTCGGGGACGCGATAATTACGAGCCTCGGTGCAAAAACCGGTGCCTTTAGAGTGTTTTTTTCATCGTCGTGATGGTTTAGCGATGAAGGATTTTGAGACGCACAGGTGGGAGCGACGTGTCTTTACACCGCCGTGCACTTGTTTCTCTTACTGACGTCCACCGCTCGGTTTGGGCGAAACGACGGACTAAACATGGATTCGCTGAGGGAAACCAGGAAACAAACAATCAAAGCTAAATCGGCGAAGCGCAAGAACAAAACGCACAAGTCCCAAAAGCTGTTCCGAAGGAAATCGTTAAAATCGCTGGGAAATTTTATGAGCAGGATTGTCAAAACTTTGGGCACTTTGGCACACTTGGGGGACGCGGATCAGCCGGACGCAGCAGCGGAGGATGATGATGGTGGATTTGGAGACACGGCGAGTGTCCACAACTCTGGGAACTACAGAGAGAGCTCGGCGAGGAAAAGCTCTTCTTACGGGTCTGTGAAAGAAAGACTGTCCTGGTGTTACGGAGAGAAAACACCGGGAGTTCAGGGTCTGAAGAATCACGGAAACACCTGTTTTATGAACGCTGTGGTGCAGTGTCTGAGTAACACAGAACTTCTGGCTGAATATCTGGGTCTGGAGCagtataaatatgaattaaatgagCGGAGGATCAACGGGATGATGAAGAGTGAGGAGGTCAGAGGGGAAGTCACGGACAAGCTGGCATCGTTAGTAAGGGCGCTCTGGACAAACGACTACACGCCTCAGCTGTCGGTGGATTTTAAGAGTGTTGTGGCCAAGTATGGCTCTCAGTTCAAAGGAAACGCTCAACATGATGCTTTAGAGTTTCTGCTCTGGCTTCTGGATTGTGTGCATGAGGACGCTAACCTCTCCACCAACAACAACCAAAGCAGAAATAGTTCATCCAGCAAGCCCGGAACTCGACACAGTTTTGTACAGGAGCACTTCCAAGCCCAGTACAGGTCATCCTTGACATGCCCGCATTGCCTTAAACAGAGCAACACTTTTGACCCTTTCCTGTGTATTTCCCTTCCAATCCCGCTGCGACAGACCAGGGCCCTGAATGTGACTCTGGTGTTCAGCACAGAAGGTCAGCGGTTTCTGAGAATAGGGCTGGCTGTGCCTCTCTTTGGGTCTATTTCAACACTCAGGGCCATGGTAGCAGAGGAGGGCAAGCTCTCTCCAGACCAGgTAATTTTGACAGAGATGAACTCGGGTGGGTTCCAGCGCTCTTTCTCTGATGAAGATGACATGACCAGTATATCAGAGAGTGATGTCATCTACGCCTTCCAGGTTCCCCCTCACTTCACCAGAGGAGGTTCCATGCGGTTCTCAGATTTCAAAGGTCACAGGCTACCGCCATCAGGGACGTTATCAACAGAATTCTTGAATCATGGGGGCTCTTCAAAAGTCCTTCTCTTAATCTGCAATGTTGCTGGCTCTGGCCAACAGGCTACAAGGTTCGGGCCACCATTTCTGATGAGAGTAGAAAGGACTCTTTCTTGGGATCATCTGCAACAGAGTGTCTGCAATAAGCTTTACGTTTTTCAAAAAACTGCAATAATAAAGACTACTGAACTGTTTAAAGTGCGTGTGGTGGGTGGATCAGCCTCCTGCAGTTATCTGTCTCCGCACGACAGCAGACCTCTGTGCCATCCCACCGTAGACAGAGCCCTCAAGTTATGTGGTCCAGGTGGTCCTTTGCATGTGAAGCTCATAATTGAATGGGACAACAAAATTAAAGAATGCCTCTTTGGCAATATTCAAGAGGAGGTGATTGAGGATGCAGAGAGTGTGAGAATCCAGCAGCAGAATCATGTACAACAGCACAGCTGCACACTGGATGACTGTTTTCAGCTCTACACCAAAGAGGAGCAGCTGGCACCAGACGATGCATGGAAGTGCCCCCACTGTAAGCAAATGCAGCAGGGAATGGTGAAGATGAGTTTATGGACACTGCCCGACATCCTCATTCTGCACCTGAAGCGTTTTCGACAGGTGGGCAAACGGCGAAACAAGCTCTCCACCCTCATTCGCTTTCCTGTAAGTGCTCTGGATATGACCCCCCATGTGGTGAAACGCAGTCAAAGCATGAAGAATCTGGCCCCGTTGCCTTCAACTTGGAAGCATGGAGAAACTGACTTTCTTTATGACTTGTATGCAGTTTGCAACCACCACGGAGGCATGCATGGAGGCCATTACACAGCCTATTGCAGGAACTCCGTGGACGGCCACTGGTACAGTTATGATGACAGCAGTGTGGAGATTGTGCCAGAGGAGGAACTGTGCACACGAGGGGCTTATATCCTGTTCTACCAGAGGAGAAATGTCATCCCACCCTGGTCTGCCAACAGCTCGGTCAGAGGTTCCACCAGCTCCTCGATGTCAGATCACTGGCTCATCCGTTTGAATGGTGACAGTAAAAGAGGAAGTATGGTTTCACGGTCTTCTACAACATGCCCTTCTTCCATCGCTGACTCCCCAGAGTCAccagtttttaaaaatgaaccCTCAATTGAGGAAAGAGGTGGGTTTGAAAGCAGACCTTTTGTGCGAGGAATCCAAGGTCGTAGTGTAAGCATGAGAAGTCCCACCAAGAGTAAAGTGCTCCCACTGCGATGGTCTTTTGGAAATAAAGACCGCCACAAACCTGTGCCGGCTTCTGAGCAGTCTCCTGCAGAACTGGTGGAGTATTTAGAGTCTGGGAGGAGACCAAGATGTACCAAAGACCCTATTGTTTCCCTAATGACTCGACCTTCAGACAAAGACAACGATGCAAAAAAAACAGCCAAATCTTCCAGCCACAGTGGCCTCAGACCTCCAGAATATCTGAAAATACCACAGGGTCAAGAAAGAAGTAGCTCAGAGAAAGCAATGGGCCAACAACCTGCCAGCAGCAGTAGATCAAGAGAAGAAGGGACCTTGACCAGACGGAGCAGCAGAAAATCTAAACCGGACCAATCACACTCCAGGAAGAGCTCTGGAGCAGGGATCCAGTCCAGTTGTAGTACTCCAAGTGGCTGGGAAACAGCACAGAAGCATGAGTCGAGTGACAAGCGTGACCAATCAGAGGATAAACATAAAAAAGGGCAGGAGACTAAACGTCATGATGTCTTCGCTTTTCTCAAAGGTGGCTTTATCAAGAAGGATTCCCTTCGGAAGTCTCGGGATAATGATTCTGTCAAAAAGGCTGATTCAGGGGTGAAGAGCCCATCTGGAGTTTCCCTCTCCAACGGGACACATAATAAAAATCCAGAAGGTAAAGTCAGTACTATGAACCATGGTAGCAGGCACGGAAGTGAACTGGCAAATGGCAAGGTGAGTCGTGGTTCCTCAGACATCAAACGCTCACAAAGCTCATCCAATATTCAAAGCAAAACTGATCTAGGCTTAAGAAGAACAGCATCTTTACACAGAAACGGCACATCGGTGGCCCAACCACAGAGCGTGACAGGGGACAGGGGCTCTCAGAGCACTTTACAACGCACACGCTACAGCACAAACTCACTGGGCAGAAAGAAGGCAGTGCCTGAATCAAGTTTCTAA

Function

symbol description
usp43a Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human USP43 (ubiquitin specific peptidase 43).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100211-1 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human USP43 (ubiquitin specific peptidase 43).

Ensembl:

ensembl_id ENSDARG00000103494

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063809 False 3369 mRNA 0.49 15 19481394 19664848
TCONS_00063810 True 3629 mRNA 0.49 15 19481394 19665114

Neighbor

gene id symbol gene type direction distance location
XLOC_032793 NA coding downstream 41235 19439100 ~ 19440159 (-)
XLOC_032792 CR387927.3 coding downstream 88417 19392860 ~ 19392977 (-)
XLOC_032791 grb2a coding downstream 99401 19344749 ~ 19381993 (-)
XLOC_032790 mif4gda coding downstream 140208 19334365 ~ 19341186 (-)
XLOC_032789 gga3a coding downstream 147447 19315715 ~ 19333947 (-)
XLOC_032795 cfap52 coding upstream 2505 19667619 ~ 19683406 (-)
XLOC_032796 CU929170.1 coding upstream 51309 19716423 ~ 19716541 (-)
XLOC_032797 ntn1a coding upstream 138934 19804048 ~ 19926657 (-)
XLOC_032798 BX537296.3 coding upstream 470945 20136059 ~ 20136156 (-)
XLOC_032799 BX537296.2 coding upstream 513322 20178436 ~ 20178533 (-)
XLOC_032784 CR925723.3 non-coding downstream 334176 19146424 ~ 19147218 (-)
XLOC_032783 CR925723.1 non-coding downstream 342760 19137841 ~ 19138634 (-)
XLOC_032774 dre-mir-193a-2 non-coding downstream 963327 18517970 ~ 18518067 (-)
XLOC_032800 NA non-coding upstream 536214 20201328 ~ 20360733 (-)
XLOC_032801 NA non-coding upstream 560323 20225437 ~ 20226644 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_00197972_00296049 USP43A coding CI01000340 null 197972 ~ 296049 (-)