XLOC_032795 (cfap52)


Basic Information

Item Value
gene id XLOC_032795
gene name cfap52
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19667619 ~ 19683406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063811
CTGCTGCCTAGATACATTTGTTTGGCTCGCAAAGCCAGAATTGTTTTCGATTCATAGTCTGAAGCTGAAAGTATCACGATGGCAGATGACACACAAGAAGTCCCTCAACTAGCATTAGAGGCTGTGATAGGTTTTAATGGACACGTGTTTTCTGGACTTAAAGTACATCCAGACAAAGAACATCTCATTTATCCTCTTGGCTGCACTGTTATTATTAAGAGTCTGAGAAGTGGAAAACAAAGTTTCCTCCATGGCCACACAAACAATGTCTCTTGCATTTCTGTGTCTAAAAGTGGACGCTATATTGCATCTGGACAGGTTACTTTCATGGGCTTTAAGGCTGATGTTATTATCTGGGACTATGAGAAGAAGGAGATTTATGCTCGTCTTTTGCTTCATAAAGCTAAAGTTGAAGATCTCAGCTTCTCCCCAAATGATAAATATTTGGTATCACTGGGTGGACAGGATGATGCCAGTATAGTAGTGTGGAACATCGAAAGTAAGGAGGCTATATGTGGCAGTCCTGCTTCAGCACAGAGTGCTGGTCACTGCCTCGCCTTAGAGTACACCAACTTGAGTGATGAAATCTTTGTCTCTGCTGGAAATGGAACTCTGCGTGTGTGGGAACTAGATTTGCTTAACAGAAAGATCCGGCCCACCGAATGTCAGACAGGACAGCTCAAGAGAATTGTCAAATGTCTTGAGATTCcaaatgatgataattatttctACTGTGGAACTACAAGTGGAGATATTCTGAAAGTGAACCTGAAGACAAGGTTGCTCAACAGCTGTGGccccgttaaacaaaaattcagcaagGGAGTCAACACTCTTAAAGTCTTGAAGACTGGTGACATTTTAGTTGGATCAGGAGACGGGATGTTGACTTTGTGCTCAGGAGCCAATTTCAAAACCATTAAGAGTGTTCAGTTGGAAGGAGGGGTGACATCAGTGACCTTGCGTGGAGACGGACACCAGTTCTATGTTGGCACAGAAGCAGCACAGATGTACAGTTTAAGCTACACTGACTTCAAACCAGAGCTCACTGCTACAAACCACAACAGTGCAGTAAAGGATGTGGCCTTTCCTTTTGGGACATCAGAGCTCTTTGCCACCTGTTCACACAACGATATACGAGTGTGGCATTCTGAGTCGTCCAAGGAGCTTCTGCGTATTACGGTGCCTAACATAACATGCCATGCTCTTGGCTTCATGCGAGATGGAAGGAGCATCTTTAGTGCTTGGAATGATGGGAAGATTCGTGTGTTTACCCCAGAAAGTGGGAAGCTAAAGCTAATTATTCATAATGCCCACAGTATGGCTGTAACTACTATAGCTGCGACCAATGACTGCAAGAGGATCGTCAGTGGAGGAGGAGAAGGACAGGTGAGAGTTTGGGAGATATTCCAAGACTCATATCGACTCATTGAGACTATGAAAGAACACAAAGCCACAGTGAACTGCATTAAGATCAAGAGCAATGACAAGGAGTGTGTGACGGCCAGCTCTGATGGAGCCTGCATCATCTGGGACTTGGTGAGGTTTGTGAGGAATCAAATGGTCTTGTCCAACACCCTGTTCAGTGTTGTGTGTTATCACCCTGAGGAATACCAGATCATCACCAGTGGCACTGACAGAAAGATTGGCTACTGGGAAGTATATGATGGGTCTGCAATCAGAGAACTTGAGGGCTCCTTGTCTGGATCTATAAACGGCATGCACATTTCTGAAGATGGGAAATATTTTGTGACAGGTGGAGATGACAAACTACTCAAGCTCTGGCTCTATTCTGATGGTGAAGTGACCCATGTTGGCATCGGGCACAGCGGAAGCATCACAAATGTGAGAATCTGTCCCAACAGCAGATATATTGTCAGTACCAGTGCAGATGGTGCAATTCTAAGGTGGAGATACCCACAAACCGCATAGAACAGTGAAGAAGGCCATCTTATTCTATTTAGGCATACAGTAGATTTGTATTGcacatatttcttttaaaaaatatttttttttatagcaagCGGCCCAACAAAACTGATATTAAAATTGCTGTGAGCTATTTATTAAAGCAAACACATGCCCTATGTCTCACTATTTCACTTATTAAGTATTACAAATTCATTTGGCACCATAATCTGTGAGAAACCATGTAATAAACTATTCATCCATATAACTAAAAAGACAAA
>TCONS_00063812
TCGACTCATTGAGACTATGAAAGAACACAAAGCCACAGTGAACTGCATTAAGATCAAGAGCAATGACAAGGAGTGTGTGACGGCCAGCTCTGATGGAGCCTGCATCATCTGGGACTTGGTGAGGTTTGTGAGGAATCAAATGGTCTTGTCCAACACCCTGTTCAGTGTTGTGTGTTATCACCCTGAGGAATACCAGATCATCACCAGTGGCACTGACAGAAAGGTACAAGACTAGACTGATCTACTGGCATGTGTTTGAGAGAAATGTGGCCAGAAAGTGAGAGACTGATAGGTGAGAGAATAGacaggaagaaaaaaacagatACTGTGTGCACAACAACATGCTGACAGAAAGCTCTCTCAGTTTCCTGTGGATGTTGTATTATCCACTCATTCTGCTCTGTGCCAAATAGTCCATCTGCTAGGCACAGCATCACTGTCCATTTAAAGACCATGGATTATTAGAATTCGTATGGTCGGCCATACGTCCATCACGTCGAAGCAAAGGAAGAATCACATTATCAGTGCTGTCATTCATATTTCATC

Function

symbol description
cfap52 Predicted to be involved in cilium assembly. Is expressed in nervous system and pronephros. Orthologous to human CFAP52 (cilia and flagella associated protein 52).

GO:

id name namespace
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050522-296 Predicted to be involved in cilium assembly. Is expressed in nervous system and pronephros. Orthologous to human CFAP52 (cilia and flagella associated protein 52).

Ensembl:

ensembl_id ENSDARG00000101679

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063811 False 2189 mRNA 0.43 14 19667619 19683406
TCONS_00063812 True 546 lncRNA 0.44 2 19671679 19672339

Neighbor

gene id symbol gene type direction distance location
XLOC_032794 usp43a coding downstream 2505 19481394 ~ 19665114 (-)
XLOC_032793 NA coding downstream 227460 19439100 ~ 19440159 (-)
XLOC_032792 CR387927.3 coding downstream 274642 19392860 ~ 19392977 (-)
XLOC_032791 grb2a coding downstream 285626 19344749 ~ 19381993 (-)
XLOC_032790 mif4gda coding downstream 326433 19334365 ~ 19341186 (-)
XLOC_032796 CU929170.1 coding upstream 33017 19716423 ~ 19716541 (-)
XLOC_032797 ntn1a coding upstream 120642 19804048 ~ 19926657 (-)
XLOC_032798 BX537296.3 coding upstream 452653 20136059 ~ 20136156 (-)
XLOC_032799 BX537296.2 coding upstream 495030 20178436 ~ 20178533 (-)
XLOC_032800 NA coding upstream 517922 20201328 ~ 20360733 (-)
XLOC_032784 CR925723.3 non-coding downstream 520401 19146424 ~ 19147218 (-)
XLOC_032783 CR925723.1 non-coding downstream 528985 19137841 ~ 19138634 (-)
XLOC_032774 dre-mir-193a-2 non-coding downstream 1149552 18517970 ~ 18518067 (-)
XLOC_032801 NA non-coding upstream 542031 20225437 ~ 20226644 (-)

Expression


Co-expression Network