XLOC_032797 (ntn1a)


Basic Information

Item Value
gene id XLOC_032797
gene name ntn1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 19804048 ~ 19926657 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063814
AGCGCGTGTCCGATGTACTCAAGGAAAAAGAGAGCTAGCGCGAACtgagattttttaatttttttgttacttttctgCTTTTGCTGAACTGTTTGACGGTGATACTGTGACCTGTGTGGAGATTTCTTTAATTGCGAACGCGTATTTATTGTAGTGTTTTTAAATCAGGTATCCAGAGTTTGCCCATGTGTTGGAGACAGATTCGGATTCACATTAGTTTTTATCTGGCATCGGTTTGAACCCAGCGGCTGTGGACTGATCAAGCTCAGACTGCCAACTGATTTGATATCCTTGTAAAATCTGCAGACGGGAACGCATCTTCTCACTAGGACGCACAGCTGTGTTTCAGCACAGGAGAGGCTGAGGAAGGCGCGCGAGGATGTTGAGAGTCTCTGATGCTTTGGTCACTTTGGTGACTCTCTGCTGTGTGCTCAAAGGGACTGTCGGCGGATATGGAATGAGCATGTTCGCCGCTCAGACCTCCCCGCCGGATCCGTGTTACGACGAGAACGGACACCCCAGAAGATGCATCCCCGACTTCGTAAACGCGGCGTTCGGGAAAGAAGTACGCGCGTCCAGCACCTGCGGCAAAACGCCGAGTCGTTACTGCGTGGTGACCGAGAAAGGGGACGAAAGACACAGAAACTGCCACACGTGCGACGCGTCAGACCCAAAGAAGAATCACCCACCAGCTTACCTGACCGACCTGAACAATCCTCACAATCTCACCTGCTGGCAGTCGGACAATTACCTCCAGTATCCTCAAAACGTCACTTTAACTTTATCCTTGGGCAAGAAATTTGAGGTGACCTACGTGAGTTTGCAGTTCTGCTCACCTCGACCGGAGTCTATGGCGATCTTTAAATCGATGGACTACGGAAAGTCCTGGGTGCCTTTCCAGTACTACTCGACCCAGTGTAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATTACTAAGCAGAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCATCCTCTCTCCGGCGGGCTGATCGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTACTTCAGGACTGGGTGACCGCCACTGACATTAAGGTGACTTTCAGCCGCCTGCACACTTTCGGAGACGAAAACGAGGATGACTCGGAGCTGGCCAGAGATTCCTATTTTTACGCAGTTTCCGACCTGCAGGTTGGAGGCAGATGTAAGTGTAATGGACACGCATCACGGTGCGTCAAAGACCGGGATGGAAACCTAGTGTGCGAGTGCAAGCACAACACAGCCGGACCAGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCCAGAGAAGCCAACGAATGTGTCGCCTGCAATTGTAACCTTCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTACAAACTCTCTGGAAGGAAAAGTGGAGGAGTCTGTCTGAACTGCCGCCACAATACAGCTGGTCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGTCCAAGCCCATCTCCCACAGAAAGGCCTGCAAAGCCTGTGATTGCCATCCTGTGGGGGCCGCGGGCAAAACCTGTAACCAAACCACAGGCCAATGCCCCTGTAAAGACGGTGTGACGGGTATCACATGCAACCGTTGTGCTAACGGCTACCAGCAGAGCCGATCACCCATTGCCCCCTGCATAAAAATTCCCATCGCTCCGCCAACCACCACTGCAAGCAGCACAGAAGAGCCATCAGACTGTGAATCCTACTGCAAGGCATCCAAAGGCAAGCTGAAGATCAATATGAAGAAGTACTGCAAGAAAGATTATGCCGTTCAAGTCCACATCCTGAAAGCAGATAAAGCAGGAGAGTGGTGGAAGTTCACCGTCAACATCATCTCTGTTTACAAACAGGGTGAAAGCCGAATTCGCAGAGGAGACCAGTTCCTCTGGGTCAGGGCAAAGGATGTGGCCTGCAAGTGTCCGAAGATCAAGTCCGGCAAGAAATACCTTCTGCTGGGGAACGACGAGGATTCGCCAGGACAAAGCGGAATGGTGGCGGACAAGGGCAGTCTGGTCATTCAGTGGAGAGACACTTGGGCTCGGAGACTCCGGAAGTTTCAGCAAAGGGAGAAGAAAGGAAAATGCAAGAAAGCATAATGAAGAGAAGAGGAAAGAGCTGACCATTCAGAGCTggacagaaaaaacaacagatAAAGATAAGAAAGATAGACTGAGCATCGCTGCTTTGAATAAAGGCATGAAGagaatattaactttttttttttggtttgtttttaaatgggAACGTGTGAAGGAGTTCATGATGcagtttttcatttctttttggtTTCTTTCAAGATTTGTTTGCTGTTTGCCAATTTTGCACCTGTGTCCAATATAAAGAAAGGTATTTTGTGTTAAATGGCGTCACGTTTCAGATACATTTTGAACGGTGTTAGTCTGGTTGAGAATCAGATTAAgccatatttcattcatttcagAAAGAAAAAGGATAGAATGCTGCAGCAGTGATTGCAAAAAAAATCCTGAATACTTATTTGATGTTGATTCCTTTGACATTTTCCAATCAATTTATGAGTAAAATAAGGTGTGTGGCAAAAATATTATGCAATAATACTTGGACAAAACTGCACACACTCTACATTTTCAACTGCTTCAAAATGTATGGTTTTAGTATGTAAAGTGTGTGTAAGGCTACTTTCAGACTACATAGACCTTTATTTTacgttatactttttaaaaatatatttttaaataaggttAACAGCACAAACCACATTGAATATGATAATTTTACAATTTGATTTGAAACACTTCTATACTGCTTGCGGTCATAAATCCGATACAGGTCAGTTTTCTGACACATGTCAATATTCGGAACTGGAATTactccaaagttttttttttaattattttaatttttttattagacaTCTGTAAACTCTCTGGGCACTGGTGTACACAACAGACAGTTGCAAAAGCTGTCAAGTGAGataaatacactataaaaatagtgtaaataattaaaaacgtaTCTTTTATCcttattgtcatcatcattgtCTACACATTTGCTGATTTCACCTTATAAACAAGCTTATTAATGCTGATTTTACTGTGTACTTCTATTTGGCATTGTTCTGCTTGCAGTCCTTTTTGATGTATTCATTAACATGGGAACCTGAGTTTGgcacaatttgaaaaaaaatgatgTGAACAGCCAAATAAGCAAATAAGTAAAAATACTCTGAATTGTGAGCAATAATTCAAATTTATGCACCAGCACCTGCAGTGAATGCAGTTTAATTGATGTAGTGAAACAAAGTATCATAGTATCACCATGTCACCCTAACCAATTCTactcaggtttttatttttgaattagaAAAAACGCATATGAAAGTCTTGTGGAAAACAGTGGTGAAACAGTGGTCTTTCGGGATTTAATATCACAGCTGCAGCACTCTATTGAGGATTAATATCTCAAAAatctgaagaaagaaaaaaaaatgtccttaaaatgtCCTTAAGCATgtcttttttattacaaaacacttTCGTTAGTAAGCTTTAGCGTTTCAAAAATTCATATGCTGTAACTGATTGCGTAATGGCATCTGAGATGTTCCTGAATTCTGTTTCAGATACAAATTGTTAATATGGCTGATATCAAAACAAATTAAGCAAAGTTTTTGGTCGaggtttgaaaaaataaaaacactttgtaACACTGCATGAAAAACACAATTCTATGCCTATATTTgagcatattatgttttataatgAATTCATCCAGCAGCTGTTGCAATTTCCATGAGGTTGTGTGGCTTATCATAGAATTCAGATGCAAacagaatgaaaagaaaaaaagacaaaacggAAAGGTTCGggaacactttataataaatacacactatgaaccatttattaagcattagcaaatagtgaattcattatctgctaagcattaactttacattaataagcgttagtaagcagtttataactgcagctacaaatgctctattcttgacttataaccacatgcataatgtgcttaataattgagTCTCCATACTTTGTTAAGAATTCATTTTTCAttagtaaattaaataatgcattatttacaaactagttatttaagcatagttggatgtttgtttgttttttaagatcattcagaatgcataagtaaatgattaataaactatttaatttaacatttatatatcttattattcaggcatatattaatagctAATTTGTATGTTATTAACCACTTTGTTAACTTAGTTTCATCCAggtttgtgacctaatctaaagtgaggactatgtatgctttataaatcccttacaaatgacaaataaaggctcagctTTATTCTaaactaaaaactgaaaataaacgaCTGTTGTCATTTCTATCCATTTAAAGATACActaatgaaactgtatcaaatgaaaaataaataaatgcaaccttatctaaagtaacattactgtacagtttaaacatcgctaaataacattgaaatgttgcatcacaagtatattgttaaattattatattgttattgctgttatttaatctaaatatgttgtattttgatacttgttattcagcaatgtttaaactttacagtaattttactttttttagatAGGATcgcaaaaatgtatttttcatttgttacggagtctttaattgtcatttataagggatttataaagcaaaaatagtcctcactttagattgggtcgcaaaactgcatgaagttaacatttattaacatacatagtaaccattactatatgcctgaataataagataaacctatattttaatagtttattaataatttactaactcattctgaatgatcctaaaaaaacATCAACTACTCTTAATTAGAAATGggttgtaaataatgtgatacttcaTTTAGTAGAAGGATCAATCAGTCACAAATCatgaaaacataatttttaagCACATTGGAAATCTgcttaagtcaagaatagagcatttgtagctgttaTAAACTTATAGCTGTAGCTGTTATAAACTTATACTATAAACTTGTaaagttataaactgcttactaacgtctattaatgtagagttagtgCTCACCAAGTAATGAATTAACAAGATgccaatgcttaataaatgactcatagtgtgtagttattataaagtgttaccttgttACCTAATCTTTGAAAACTGATGCTGCTGGGTTAACCCAGAATGCTGCAGACTCCCAAAAAACCATAGCAAACTCAGAACAACAacataaacttttaaaaactcaGATTGCCTTGATTAGTCAACAAACAACTgctgacaaaaaacaaaacaaaaaaagctttgAAAAAATCAGCATCTGTTGTCACAAACAGTCACATTAGACACAACAATATAGGCTCCATTTTAAGCATTAACTTCTGTGTCAGCCTTGTGTGTAAATCTATtacatatttctatatatataaaaaaaaaaacactatgtgTTGATTTAGGCTAACAAATGCAAAAGCATGCTTGTACCAACCTTAAAATGATTGGCATGCATTCAAATTGACATTTCTTTCAACTTAGAACAAAAACCAccatgtatatttttgtataagACACAATGATTGAGGTGGACGACTCTAAACACAAACATCTTTTCTTGCTCCATTTGATGCTCCGATTCGATTGTTTATAATCCAGACATGGATGATGACGTCCTTTAGTTAAAACAGAACTTCAGTTTGATGAGTTCAACATATAAACAGGCCTTTTCTCAAGTCCTGAAAGTGTTGCTAGAATGCTGTGTATAGTGAGTTTTTTTCCTTGTGTGTAAAACAGTATTTAGAAGTATTAACTAGTAATTCTTAACTAGCATTTAGTTTTGTAAAGCAACAGCATCTCTCCTTGAAAGTGTCCATGTCCATTTAGGGTCTGTGAATGTAGGAATGCATGTACAGTAATCTTTGCCTTCAATAGAGAACTGTGAGAAACGCTGCTCATATTCACACAAGCGCAAGTCCATTTCTGTTACCCATGAGACTAAAGTTCTCTAAAGTACAGCTTTTATGTTGATTTTGAGGGGTCATTTGATGTTTAGCTGCAAGAACTGATTATTTCAGGCATCAAATaccaaaagaaaagagaaaaaaaaaggatggTTTTGATGGACGGTTTACGTGTGCAGTGATGATCCTCTTTGCTCAATGATTACTTGTAAATGTACACATTATGTATGGCATACAGATATTTATACACGTGCTGTATTTACCGGTTACAAACCATATTCCTAATACCAcatgtaaatgtattttgtttggCACTCAGTATCTTAGTGCACACTCATTTTATTAGTATTCCGATGATGTaaatttatgttgttttgtttttcttggcaGCAGTGGAAAGATGGCTCCTGTATTTGACATTACCAGCAGACCTTACATGCTTCTTGTTCATATTATGAATTGTAAATTTAGCTGTTGCAAATACAAGACGTCTGCAATATTGTTTTACAATGCATACTAATATATTATGGTTATTATAAGAAAATATTTAATGACACAAGACATTGTGGgtttttttatgtcttttatttttctttcttttttttcttttctttttacagCAGTTTGTGGTTGTTTAGATGGTTGTGATTAAAATCCAGACGGGACGATAACTACTGAACACCAACCTGGTAGAACTACATTCAGTATTCATTTGgaataaaatctcaaaaaatga
>TCONS_00063815
AGCGCGTGTCCGATGTACTCAAGGAAAAAGAGAGCTAGCGCGAACtgagattttttaatttttttgttacttttctgCTTTTGCTGAACTGTTTGACGGTGATACTGTGACCTGTGTGGAGATTTCTTTAATTGCGAACGCGTATTTATTGTAGTGTTTTTAAATCAGGTATCCAGAGTTTGCCCATGTGTTGGAGACAGATTCGGATTCACATTAGTTTTTATCTGGCATCGGTTTGAACCCAGCGGCTGTGGACTGATCAAGCTCAGACTGCCAACTGATTTGATATCCTTGTAAAATCTGCAGACGGGAACGCATCTTCTCACTAGGACGCACAGCTGTGTTTCAGCACAGGAGAGGCTGAGGAAGGCGCGCGAGGATGTTGAGAGTCTCTGATGCTTTGGTCACTTTGGTGACTCTCTGCTGTGTGCTCAAAGGGACTGTCGGCGGATATGGAATGAGCATGTTCGCCGCTCAGACCTCCCCGCCGGATCCGTGTTACGACGAGAACGGACACCCCAGAAGATGCATCCCCGACTTCGTAAACGCGGCGTTCGGGAAAGAAGTACGCGCGTCCAGCACCTGCGGCAAAACGCCGAGTCGTTACTGCGTGGTGACCGAGAAAGGGGACGAAAGACACAGAAACTGCCACACGTGCGACGCGTCAGACCCAAAGAAGAATCACCCACCAGCTTACCTGACCGACCTGAACAATCCTCACAATCTCACCTGCTGGCAGTCGGACAATTACCTCCAGTATCCTCAAAACGTCACTTTAACTTTATCCTTGGGCAAGAAATTTGAGGTGACCTACGTGAGTTTGCAGTTCTGCTCACCTCGACCGGAGTCTATGGCGATCTTTAAATCGATGGACTACGGAAAGTCCTGGGTGCCTTTCCAGTACTACTCGACCCAGTGTAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATTACTAAGCAGAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCATCCTCTCTCCGGCGGGCTGATCGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTACTTCAGGACTGGGTGACCGCCACTGACATTAAGGTGACTTTCAGCCGCCTGCACACTTTCGGAGACGAAAACGAGGATGACTCGGAGCTGGCCAGAGATTCCTATTTTTACGCAGTTTCCGACCTGCAGGTTGGAGGCAGATGTAAGTGTAATGGACACGCATCACGGTGCGTCAAAGACCGGGATGGAAACCTAGTGTGCGAGTGCAAGCACAACACAGCCGGACCAGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCCAGAGAAGCCAACGAATGTGTCGCCTGCAATTGTAACCTTCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTACAAACTCTCTGGAAGGAAAAGTGGAGGAGTCTGTCTGAACTGCCGCCACAATACAGCTGGTCGCCACTGCCACTACTGCAAAGAGGGCTACTATAGAGACATGTCCAAGCCCATCTCCCACAGAAAGGCCTGCAAAGGTATGAAGGATACTAAAGCTGCACACCATAGGCAAAAACAGGGTGACCAGGTTTGGTCTTATGACCCCAAAGTCTGCAACTTAACACTTGACTCTTTACCCAGCtgggaaaaaaggaaagaaaaacaaaaacaatagaagCCATCACAAAAAGTTGAAATGGTTTCCATTAAAAATATCCCTAACAACCA

Function

symbol description
ntn1a Acts upstream of or within several processes, including circulatory system development; closure of optic fissure; and neuron differentiation. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including brain; head; optic cup; optic vesicle; and somite. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human NTN1 (netrin 1).

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0061386 closure of optic fissure biological_process
GO:0003146 heart jogging biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0001525 angiogenesis biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0030516 regulation of axon extension biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0035908 ventral aorta development biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0021960 anterior commissure morphogenesis biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048665 neuron fate specification biological_process
GO:0030878 thyroid gland development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0061626 pharyngeal arch artery morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005604 basement membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-169 Acts upstream of or within several processes, including circulatory system development; closure of optic fissure; and neuron differentiation. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including brain; head; optic cup; optic vesicle; and somite. Human ortholog(s) of this gene implicated in congenital mirror movement disorder. Orthologous to human NTN1 (netrin 1).

Ensembl:

ensembl_id ENSDARG00000105112

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063814 False 6815 mRNA 0.38 6 19804048 19926657
TCONS_00063815 True 1773 mRNA 0.50 2 19845979 19926657

Neighbor

gene id symbol gene type direction distance location
XLOC_032796 CU929170.1 coding downstream 87507 19716423 ~ 19716541 (-)
XLOC_032795 cfap52 coding downstream 120642 19667619 ~ 19683406 (-)
XLOC_032794 usp43a coding downstream 138934 19481394 ~ 19665114 (-)
XLOC_032793 NA coding downstream 363889 19439100 ~ 19440159 (-)
XLOC_032792 CR387927.3 coding downstream 411071 19392860 ~ 19392977 (-)
XLOC_032798 BX537296.3 coding upstream 209402 20136059 ~ 20136156 (-)
XLOC_032799 BX537296.2 coding upstream 251779 20178436 ~ 20178533 (-)
XLOC_032800 NA coding upstream 274671 20201328 ~ 20360733 (-)
XLOC_032801 NA coding upstream 298780 20225437 ~ 20226644 (-)
XLOC_032802 NA coding upstream 357632 20284289 ~ 20432247 (-)
XLOC_032784 CR925723.3 non-coding downstream 656830 19146424 ~ 19147218 (-)
XLOC_032783 CR925723.1 non-coding downstream 665414 19137841 ~ 19138634 (-)

Expression


Co-expression Network