G1373095 (LOC106567010)


Basic Information

Item Value
gene id G1373095
gene name LOC106567010
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 39220492 ~ 39285814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1568692
TCCAGGTGCCAGTCATGACAAGCTTTATTAGCAGAGCAAAAGAAAAGGAAAGAAAGTCCAATGTCCAAAATACATTTCaaacaaaaagaaaaaaaaagaagaaaagaaaATAGCAATAATAGCTATCAAATAAATATTCACGTCAACAACAAGATATCGGTCTTTCATTGTTTGAATCAAACATTTTCCTGCGACATTCTTTAAAGATGTCTTCACAAAGCTTATAAAACAATATATGTACAATCATTCAACCGTTATAGGACATGCTAGGAGTTGGACTGCATCAATGTACCACACGCTGACTGTACTACACAATGGCTGGCTGCATATTAACTGATATGGTCCATGAAATGCTTCTGTATCCAATACCTGAGCCCCCTGTATGAGCTTGGAACTATTAGAAAACTTGAGAGAAAAAATATTCTGAATCCAAATTCCGATCAacccttgagatagaagcagaaTCTGGAGTTACAATGTATGTGGATATGTCCTGTTATGTGATACGCCCTCTTCACTCCCTATCTGTGCTACGAACCAACCGAGAGACTCAGAGGAGCCAGTCTGAGTCTCGATTGGTTTCCTGTGTTGAACTGTTGCTAGGCGTTGTTGAGGAATTCCAGTGTGTGACCAACAAGGAACTAGAGCCTTTGTGCAAATCAAATCACTCCTCTAGtcactgtgactgactgactaccgCAGCTCACCACATAGGTTAACAAACACGGTCTCAGTCACAAAATCAAAACAAGGATTCAATTCACGCTTTAATACGAAAATTAAAACACAATAAACCCAGAAAAACGAATAATGGAAAAATATCTATCTTTGGACAGGGCCAGCCTGTGCATTTGTTAGTCGATTGTTCAAAGTTAGGAGGCTTCCACATAACGTACCCCAATGCAAAACGCTTCTACAAGCCAACAGTGGCTGGAGCCACATGTCTTAGACCAGATAATTTCCTCTACTCACTCATCTCCTAACGATACTGTACAACTGATAGCAGACTCACTGACATCCTCAAATAGCATTATTCACCTTTAGTCTCAAATGTAAAAAATGGTTTAGCGGCACAGCAAGCCATGCCATTGGTTACCCTACATACCAGTGGCTACTGACgggtagaagaggagaaaggggcAAACACAGATGGGACGGGAGATTATTTTTTTTCCCATGTAGCTGTCACATGACATATCTCCCAAACTGATCCCAAAGCTGCATTTTTATTGCCACTCGATCAGTTGACTTTGCATCGCAATAACTTGGATCATTATTGCTTGATATGCTAAAGCAGAGCTAGATCAATGCCATAGTGTACACCCACATTTCTAACCATGAAGCCAAAGATTGAAGCAAAAAAAAAAGGGTCATAGTTTAGCGACCCATTGGACTGGACTGTCCTCCATGTTGGTGGGACTTAAGTGCTGCTCACTGGAGGTTTACTGGAGGAACAAGAGAAATAGAAGGACAAGAAGAAACATTATGGAAGAGTAAGAGAGTAAAGGAAATGGAGTGCTACATTGGATTGTTGAAAATTAAATAAATCAATAGCTATATTTTCAACAATCAAGATGAACTTGGGGGATACGATGTTAAGGACATAATAGAAACTGCACATCTCTGTTGGTTAtcaacagtgtttcccctaggatttttTTCAGCAGCGGTGGCAAGTTTAGTGTGTAGGGGTGGGAGGTTAAAAGTTTTCTTCACAAGATAAAAAAAGGTCACACGTTGCACATTTTCCAATTTGGACAAATCAACATGTGCCTAAATAGTAGTGATGTCACACCATCATGGTTGCATACCGTTACTGTAACAAGTTAGAACAATGGTTAGCTGATGATCAAAAAGTCAAGATACAGTACTGAAAAATATGAGATATGCACTAAAGAGTACTTCAGGACAAAGTGTCCACTTGTTCTGAATTGATTtcacttttttttggggggggggggggatacaacATGGAATAAATCTTTCTCTTGATAAAGCCCTCGTGATGAAACCCAACACGAATGGCCAATGGCGCGGCCCCCGACCAAACATTTTAGAGGCCGTCCTCTTCGCCGCAGGTAAAATGTTTCTGTTTTTAAAGTTAATTtgctgcagttctacacattttgtcatggcttATGCTGTGTTCTTACGCTATCttagtgactcaaacattataacaaaatcaatagGGGCCTATGCCATGACATTTCTTGAATTTTTGATTCTTCCTGACTCGTCTCGTTTTTATTTAGGTGATTGTTAGTTATCAAAGTTGATCTAATTCAAAAATATATAGCTCCATTATCTGTTCTACATGCTTTATATCTGGTTTCAGGCCTAAAGCTGCTAAATGAATTTAGCTGAAACACCGATCAAAATACTAATAACGTGATACTGAAACACTTTCTTTCTCCTGTGGTAGGTCCGTAAACTGGAAATTCCATTTCCCCAGTGGATTCATCCTGACAGTTTTTAAGCAGCATATTCTAGTTGCAAACAGACAGTCCTTTAAAGAATCACCTCAGGGGATTTTCAACACTGACCTGGTATCCATTACCATAAGCAAGTTCCCAGATCTCTTGACAGATCTGCATTAAACCATGTTGTGTCTATGGCCCAGGGAAGAACAATACCCTACTCCCTGGAAGTGGTTTCCTCTTTATCAAATGATGGGAGAGAACTGGATTTCTAGCACTCCAGTACATTTACTTGTTGTTTTTTTACTTCCCTATTTTCTTTGCTTAACCCAAAGCTCCCTCATCTATCTGTTCTGTACATTGCCTCTTTAGCCTGGTACTCCACTGACTGAGAGCCTAGAAGAGCACGGATGGCTCACACTTCACAGTCTAGCCTGgcgtctgcctgtctcttctctctct
>TU1568693
TCCAGGTGCCAGTCATGACAAGCTTTATTAGCAGAGCAAAAGAAAAGGAAAGAAAGTCCAATGTCCAAAATACATTTCaaacaaaaagaaaaaaaaagaagaaaagaaaATAGCAATAATAGCTATCAAATAAATATTCACGTCAACAACAAGATATCGGTCTTTCATTGTTTGAATCAAACATTTTCCTGCGACATTCTTTAAAGATGTCTTCACAAAGCTTATAAAACAATATATGTACAATCATTCAACCGTTATAGGACATGCTAGGAGTTGGACTGCATCAATGTACCACACGCTGACTGTACTACACAATGGCTGGCTGCATATTAACTGATATGGTCCATGAAATGCTTCTGTATCCAATACCTGAGCCCCCTGTATGAGCTTGGAACTATTAGAAAACTTGAGAGAAAAAATATTCTGAATCCAAATTCCGATCAacccttgagatagaagcagaaTCTGGAGTTACAATGTATGTGGATATGTCCTGTTATGTGATACGCCCTCTTCACTCCCTATCTGTGCTACGAACCAACCGAGAGACTCAGAGGAGCCAGTCTGAGTCTCGATTGGTTTCCTGTGTTGAACTGTTGCTAGGCGTTGTTGAGGAATTCCAGTGTGTGACCAACAAGGAACTAGAGCCTTTGTGCAAATCAAATCACTCCTCTAGtcactgtgactgactgactaccgCAGCTCACCACATAGGTTAACAAACACGGTCTCAGTCACAAAATCAAAACAAGGATTCAATTCACGCTTTAATACGAAAATTAAAACACAATAAACCCAGAAAAACGAATAATGGAAAAATATCTATCTTTGGACAGGGCCAGCCTGTGCATTTGTTAGTCGATTGTTCAAAGTTAGGAGGCTTCCACATAACGTACCCCAATGCAAAACGCTTCTACAAGCCAACAGTGGCTGGAGCCACATGTCTTAGACCAGATAATTTCCTCTACTCACTCATCTCCTAACGATACTGTACAACTGATAGCAGACTCACTGACATCCTCAAATAGCATTATTCACCTTTAGTCTCAAATGTAAAAAATGGTTTAGCGGCACAGCAAGCCATGCCATTGGTTACCCTACATACCAGTGGCTACTGACgggtagaagaggagaaaggggcAAACACAGATGGGACGGGAGATTATTTTTTTTCCCATGTAGCTGTCACATGACATATCTCCCAAACTGATCCCAAAGCTGCATTTTTATTGCCACTCGATCAGTTGACTTTGCATCGCAATAACTTGGATCATTATTGCTTGATATGCTAAAGCAGAGCTAGATCAATGCCATAGTGTACACCCACATTTCTAACCATGAAGCCAAAGATTGAAGCAAAAAAAAAAGGGTCATAGTTTAGCGACCCATTGGACTGGACTGTCCTCCATGTTGGTGGGACTTAAGTGCTGCTCACTGGAGGTTTACTGGAGGAACAAGAGAAATAGAAGGACAAGAAGAAACATTATGGAAGAGTAAGAGAGTAAAGGAAATGGAGTGCTACATTGGATTGTTGAAAATTAAATAAATCAATAGCTATATTTTCAACAATCAAGATGAACTTGGGGGATACGATGTTAAGGACATAATAGAAACTGCACATCTCTGTTGGTTAtcaacagtgtttcccctaggatttttTTCAGCAGCGGTGGCAAGTTTAGTGTGTAGGGGTGGGAGGTTAAAAGTTTTCTTCACAAGATAAAAAAAGGTCACACGTTGCACATTTTCCAATTTGGACAAATCAACATGTGCCTAAATAGTAGTGATGTCACACCATCATGGTTGCATACCGTTACTGTAACAAGTTAGAACAATGGTTAGCTGATGATCAAAAAGTCAAGATACAGTACTGAAAAATATGAGATATGCACTAAAGAGTACTTCAGGACAAAGTGTCCACTTGTTCTGAATTGATTtcacttttttttggggggggggggggatacaacATGGAATAAATCTTTCTCTTGATAAAGCCCTCGTGATGAAACCCAACACGAATGGCCAATGGCGCGGCCCCCGACCAAACATTTTAGAGGCCGTCCTCTTCGCCGCAGGTAAAATGTTTCTGTTTTTAAAGTTAATTtgctgcagttctacacattttgtcatggcttATGCTGTGTTCTTACGCTATCttagtgactcaaacattataacaaaatcaatagGGGCCTATGCCATGACATTTCTTGAATTTTTGATTCTTCCTGACTCGTCTCGTTTTTATTTAGGTGATTGTTAGTTATCAAAGTTGATCTAATTCAAAAATATATAGCTCCATTATCTGTTCTACATGCTTTATATCTGGTTTCAGGCCTAAAGCTGCTAAATGAATTTAGCTGAAACACCGATCAAAATACTAATAACGTGATACTGAAACACTTTCTTTCTCCTGTGGTAGGTCCGTAAACTGGAAATTCCATTTCCCCAGTGGATTCATCCTGACAGTTTTTAAGCAGCATATTCTAGTTGCAAACAGACAGTCCTTTAAAGAATCACCTCAGGGGATTTTCAACACTGACCTGGTATCCATTACCATAAGCAAGTTCCCAGATCTCTTGACAGATCTGCATTAAACCATGTTGTGTCTATGGCCCAGGGAAGAACAATACCCTACTCCCTGGAAGTGGTTTCCTCTTTATCAAATGATGGGAGAGAACTGGATTTCTAGCACTCCAGTACATTTACTTGTTGTTTTTTTACTTCCCTATTTTCTTTGCTTAACCCAAAGCTCCCTCATCTATCTGTTCTGTACATTGCCTCTTTAGCCTGGTACTCCACTGACTGAGAGCCTAGAAGAGCACGGATGGCTCACACTTCACAGTCTAGCCTGgcgtctgcctgtctgtatgtgtctctctctctgtctgtctagacctGCTGCTCTTATCACAGGTGAGACAATGAGATGTGTAATGGCCTTCTGTTCTCGCTGTGGTCAAATCAAACACTCCTCTCTCCACGCCTCTCTCAATCAGCCCCCGTTGGGCCTAAATCAAGAAGAGCCCAAAACCCTTTTGGGAGAACACGGATTTGCTCACGTTGCTACACCTTATAGTTCCCACTCTGCAGTGTAGGAGGGATACAATGTTCAGTAACGTCTGATATATTTTCATGCTAGATTTGTTTTGAAAAATAGGCAATGCGTTTTCTTGAGAGGCATTTTTTCTTCACAAAGTTTAAACTTTGTCACTTGTTGCACATTTTCCAATTTGGACAAATCAACATGTGCCTAAATAGTAGTGATGTCACACCATCATGGTTGCATACCGTTACTGTAACAAGTTAGAACAATGGTTAGCTGATGATCAAAAAGCCTAGATACAGTACTGAAAAATATGAGATATGCACTGAAGAGTATTTCAGGACAAAGTGGACAAGGTGTCCACTTGTTCTGAATTGATTTCACTTTGAGGGGGGGTGAGGAAGGATTCAACATGGAAGAAGAGCCAACTCTTGATTAAGCCATCGTGATGaaaccccccccccttccccgaACCAAACAGTCAGGGGTTCTGGGGAATCGGAGCAGCGTGTGGGAGGGGAGTGACACCCCCCGCCCTGGGTCTCCACTCACATGACGGAGCAGCTCTTGGTCTTCTCCTTCTTGAAGGTAGAGGAGAGCAGCTCGGAGCGGCTGGGGAGGTGGAGGAGTCTCTTCGAGAGACGTCGGGTGGGGCTGGTCTTGGGGAGCGGCTGGAGCTTGTTGATGCAAGCAAGAGCGGCCGTCCGGAACACACTGTGGATACTCTTCTCTGAGGTGAATGCTGAACACTCCAGGTAGGCCTCAGCGCCTAGCTGCTTGGCCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1568692 False 2882 lncRNA 0.40 2 39220492 39285814
TU1568693 True 3834 lncRNA 0.42 2 39281911 39285814

Neighbor

gene id symbol gene type direction distance location
LOC110492900 NA coding downstream 858 39218685 ~ 39219634 (-)
LOC110491931 LOC106567008 coding downstream 2310 39213698 ~ 39218182 (-)
LOC118939532 NA coding downstream 72647 39124872 ~ 39147845 (-)
si:dkey-157g16.6 LOC106567002 coding downstream 176589 39013363 ~ 39043903 (-)
LOC110491920 LOC106566993 coding downstream 602108 38603424 ~ 38618384 (-)
LOC110491935 LOC106567011 coding upstream 24167 39309981 ~ 39333682 (-)
zgc:158263 LOC106567014 coding upstream 265903 39551717 ~ 39563244 (-)
LOC110491945 LOC106567025 coding upstream 442099 39727913 ~ 39732807 (-)
LOC110491943 LOC106567023 coding upstream 447630 39733444 ~ 39751919 (-)
LOC110491953 NA coding upstream 675810 39961624 ~ 39992363 (-)
G1373061 NA non-coding downstream 59646 39160186 ~ 39160846 (-)
G1373056 NA non-coding downstream 73197 39147052 ~ 39147295 (-)
G1372991 NA non-coding downstream 76159 39143391 ~ 39144333 (-)
G1372989 NA non-coding downstream 81833 39138394 ~ 39138659 (-)
G1373134 NA non-coding upstream 23663 39309477 ~ 39309703 (-)
G1373138 NA non-coding upstream 35227 39321041 ~ 39379750 (-)
G1373185 NA non-coding upstream 116103 39401917 ~ 39402143 (-)
G1373191 NA non-coding upstream 125070 39410884 ~ 39411103 (-)
G1373195 NA non-coding upstream 132071 39417885 ~ 39418260 (-)
G1372979 NA other downstream 228272 38991592 ~ 38992220 (-)
G1372845 LOC106566999 other downstream 447615 38771628 ~ 38772877 (-)
G1371532 NA other downstream 936426 38283408 ~ 38284066 (-)
G1370826 NA other downstream 1559027 37660689 ~ 37661465 (-)
G1373200 NA other upstream 136336 39422150 ~ 39422852 (-)
G1373226 LOC100380735 other upstream 244110 39529924 ~ 39535299 (-)
G1373378 NA other upstream 434050 39719864 ~ 39720977 (-)
G1373490 LOC100380641 other upstream 654408 39940222 ~ 39943028 (-)
LOC110491948 LOC106567031 other upstream 796643 40080690 ~ 40119070 (-)

Expression


Co-expression Network