XLOC_032800


Basic Information

Item Value
gene id XLOC_032800
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 20201328 ~ 20360733 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065130
ggcatggagcatgtggaggAACAGGGAAACGCACCTTAGTAATGACAAGTGCATCGTAATAAATTAGATACAGACTTACACTTTTTtaggttgaatcaaattaactttataaaacatttaaaatcatataCTTTCATTTGTACATACTAGATGATTGTCTGGAATCTCTTTAAGTCAGATAAATGTCTTGTTTGcggcaggtgtttctttttcctgtaatggacacacaacagacagaagaaggagactcacaagagcatcggtgGAGATTTGTCTGAAAACCGCTGGTTAACAGTTTATGCATTTctggagttcagcaagcatgtagagctctgttagttgtGTCTTTATCTTTTCCAGGCTGGAGTGCAGCATGTGTAGAcaaataggaatcacacacctcagcaatggacactgatggtcaggaATATCCTTTAAAGGCAGATGAatgggtgcatggatggatgttcttccaagtggaagggggtggtggtgggcatagattgttagatatATGTCTTGTCTGTGGCTATTATTTACAACTACAACAGGCAGAAGAGTCAGACTCACGAGCAAAATGGTGTATATTTATCTGAGGAACACTGGAGAACGTTTGGTTTATTGATGCAGATCATCCAGCAAGTAGAGCTTTGTTAGTCTTGTatttgtcttttgcagattagaCTGGGGCCTGTGGAGAAATGGGACTCGCACCTCAGCATGACTGGAAACTGATGgtctgggctgcgtttccc
>TCONS_00063818
agatagttaggccttgtctgtgtcaggtttttcctttttcagctaatggagggcaggcagaagagggagactcaAAAGAGCATCGGTGGACATTTATCTAGAAAATGCTGGAGAACAGCAGattggagtggagcagaagaaggagactcacaagcGGAATGGTGGAGATATACTGCAAGACCTGGAGCTCAGGAagcaggttggcatggagcatgtggaggAACAGGGAAACGCACCTTAGTAATGACAAGTGCATCGTAATAAATTAGATACAGA
>TCONS_00063819
ttgagaaccactggtatagatagatagttaggccttgtctgtgtcaggtttttcctttttcagctaatggagagcaggcagaagagggagactcaAAAGAGCATCGGTGGACATTTATCTAGAAAATGCTGGAGAACAGCAGattggagtggagcagaagaaggagactcacaagcGGAATGGTGGAGATATACTGCAAGACCTGGAGCTCAGGAagcaggttggcatggagcatgtggaggAACAGGGAAACGCACCTTAGTAATGACAAGTGCATCGTAATAAATTAGATACAGA
>TCONS_00065133
AAAGAAGTGTGGACTGTGCACTTGGggctgtctttgtttgtttgcagattggagtggagcagaagaaggagactcacaagcGGAATGGTGGAGATATACTGCAAGACCTGGAGCTCAGGAagcaggtagaactgcttgaacagactgaacaatggagtttgttttcaatattaaataaagacctgatatctttctctttgacaggttggcatggagcatgtggaggAACAGGGAAACGCACCTTAGTAATGACAAGTGCATCGTAATAAATTAGATACAGCCTTAAATTTTTtaggttgaatcaaattaactttataaaacatttaaaatcatataCTTTCATTTGTACATACTAGGTGAGGGTCTGGTATCTCTTTAAGTCAGATAAATGTCTTGTCTGcggcaggtgtttctttttcctgtaatggacacacaacagacagaagaaggagactcacaagagcatctgTGGAAATTTGTCTGAAAACCGCTGGTTAACAGTTTATGCATTTctggagttcagcaagcatgtagagctctgttagttgtGTCTTTATCTTTTCCAGGctggagtgcagcatgtggagacaaataggaatcacacacctcagcaatggacactgatggtcaggaATATCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117823

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065130 False 755 lncRNA 0.41 1 20201328 20202082
TCONS_00063818 False 276 lncRNA 0.46 3 20202009 20288898
TCONS_00063819 False 297 lncRNA 0.45 3 20202009 20360733
TCONS_00065133 True 640 lncRNA 0.41 1 20287774 20288413

Neighbor

gene id symbol gene type direction distance location
XLOC_032799 BX537296.2 coding downstream 22795 20178436 ~ 20178533 (-)
XLOC_032798 BX537296.3 coding downstream 65172 20136059 ~ 20136156 (-)
XLOC_032797 ntn1a coding downstream 274671 19804048 ~ 19926657 (-)
XLOC_032796 CU929170.1 coding downstream 484787 19716423 ~ 19716541 (-)
XLOC_032795 cfap52 coding downstream 517922 19667619 ~ 19683406 (-)
XLOC_032808 NA coding upstream 21720 20382453 ~ 20382910 (-)
XLOC_032809 NA coding upstream 22897 20383630 ~ 20384731 (-)
XLOC_032810 BX927341.5 coding upstream 48824 20409557 ~ 20409654 (-)
XLOC_032811 NA coding upstream 52375 20413108 ~ 20467743 (-)
XLOC_032812 NA coding upstream 76211 20436944 ~ 20437403 (-)
XLOC_032793 NA non-coding downstream 761169 19439100 ~ 19440159 (-)
XLOC_032792 CR387927.3 non-coding downstream 808351 19392860 ~ 19392977 (-)

Expression


Co-expression Network