Fish Transcriptome and Expression Database

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model fish

XLOC_032806 (BX927341.2)

Basic Information

Item	Value
gene id	XLOC_032806
gene name	BX927341.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	20337144 ~ 20337241 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063822
caggtttTCTGGTTTGACGTCCCGATGCAGGACGCCGCGGTTCTCGCAGTGTTTTAGGGCcgcgatcagctgcaccagcactttcttggccagacgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113569

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00063822	True	98	miRNA	0.59	1	20337144	20337241

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_032805	NA	coding	downstream	4148	20327809 ~ 20332996 (-)
XLOC_032804	NA	coding	downstream	20977	20314291 ~ 20316167 (-)
XLOC_032803	BX927341.1	coding	downstream	37496	20299551 ~ 20299648 (-)
XLOC_032801	NA	coding	downstream	110500	20225437 ~ 20226644 (-)
XLOC_032799	BX537296.2	coding	downstream	158611	20178436 ~ 20178533 (-)
XLOC_032807	NA	coding	upstream	22281	20359522 ~ 20360276 (-)
XLOC_032808	NA	coding	upstream	45212	20382453 ~ 20382910 (-)
XLOC_032809	NA	coding	upstream	46389	20383630 ~ 20384731 (-)
XLOC_032810	BX927341.5	coding	upstream	72316	20409557 ~ 20409654 (-)
XLOC_032811	NA	coding	upstream	75867	20413108 ~ 20467743 (-)

Expression

Co-expression Network