G1375396 (hoxc10aa)


Basic Information

Item Value
gene id G1375396
gene name hoxc10aa
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41489002 ~ 41494077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571271
CAACGAAAGAGGTCTAACGTCTACCCCATGTTGTTTACAGCCCATTCTCTCTATGAGAATCTAAAGTACGTTTTACAGCCCGTCACAAACATGAGAGCCGGGGAGAAAAGTCTCCGTCCCGGCTATTACAGCTCCAGTTCATTTACAATGCCATTTGCGAGGACTTCAGTCAGAGTCTAGGGTGTAATTGAACGGAAAGTGTCGCCCTTGATGAAGACGAACTGACGTAATCAAGGCAGTTTCTTGTTGCGGAGCCAGGAAGCGAATCCCAACAACATGAAACTACCTAAACCACGCTTCAGCTGCGCAAGATGGGGTGTTCCATCGGGAAGGGAGACAAACAAACAGCAAAACACTCAAAGCCAGATGTCGTCACCTGGTCCAAAGAAGCAAAGCCTGTCCCGACCTGCTCTTTTCGCTGTCCCCTGCTCCCTCTGGGGTAtacctgtttctctcctccataACATTCGGACGTCGCCGAGACAGCGGTTTGGTCGGTCTGGCTGCTACTATTGTTCCCAAGCCGGATGTAAGTAGCCGACTCTGTAGCGTCCTTATTAGCCCTGCTGCTACTGTCACCCTGATACAGACAACAGAACGCCTCCTCTTTGACGTTGTCGGTTGGAAACGAACACGGTTGTAAACTGGACTGGGCAACAGGTTGCTCGTCCCTGTTAGTTTTGGAAGCCGAGGTCCATGTGCCCAGTTGGGATGACAGGTAAGGCGCATCTTGGTAGGAGCCGAGAGGGTGGCTGCTCAGAGGAACCTCGTCTTTTTTCGATCCAACTACTCCAAAATGTCTCATCATTGAGCATCCATACTCAGATGCAGCCGGGTGGATGTACATTCCATGGTTGCTGTTGGAGTAGCCTTCGCCTCTATAGGAAGATGATCCTCCCATCAAAGAATCCATAAGGAAATGACCCGCAGACATGTTATCCTGGCATGACATTAtttgtattgttgttgttttttcccccgTTTCTGTTCCTGTAGTAAAGGTTTTCTGGAGGAGAATAAGGACAGTTGGAAGCTGACATATTTTG

Function

NR:

description
LOW QUALITY PROTEIN: homeobox protein Hox-C10a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571271 True 1046 lncRNA 0.49 2 41489002 41494077

Neighbor

gene id symbol gene type direction distance location
calcoco1a LOC106572538 coding downstream 93334 41385586 ~ 41395668 (-)
LOC110491987 LOC106567064 coding downstream 210005 41262830 ~ 41278997 (-)
mfsd5 mfsd5 coding downstream 235219 41249937 ~ 41253783 (-)
LOC110491989 LOC106567063 coding downstream 240963 41242965 ~ 41248039 (-)
LOC110491986 LOC106567061 coding downstream 248692 41230602 ~ 41240310 (-)
cbx5 LOC106567067 coding upstream 143760 41637837 ~ 41645221 (-)
nfe2 LOC106567066 coding upstream 155120 41649197 ~ 41657737 (-)
znf740b LOC106567069 coding upstream 194169 41688246 ~ 41697155 (-)
zgc:174906 LOC106567072 coding upstream 206318 41700395 ~ 41704276 (-)
spryd3 LOC106567075 coding upstream 237115 41729589 ~ 41814584 (-)
G1375395 NA non-coding downstream 6716 41481877 ~ 41482286 (-)
G1374850 NA non-coding downstream 32391 41456386 ~ 41456611 (-)
G1374790 NA non-coding downstream 88848 41363933 ~ 41400154 (-)
G1374755 NA non-coding downstream 170350 41317180 ~ 41318652 (-)
G1374704 NA non-coding downstream 229627 41257403 ~ 41259375 (-)
G1375479 NA non-coding upstream 116040 41610117 ~ 41610357 (-)
G1375541 NA non-coding upstream 344349 41838426 ~ 41841200 (-)
G1375561 NA non-coding upstream 357959 41852036 ~ 41852546 (-)
G1375576 NA non-coding upstream 370155 41864232 ~ 41952990 (-)
G1374491 LOC106567058 other downstream 459596 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 634413 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 963724 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1404176 40080690 ~ 40119070 (-)
G1373490 LOC100380641 other downstream 1545974 39940222 ~ 39943028 (-)
G1375495 NA other upstream 169671 41663748 ~ 41664049 (-)
LOC110492013 LOC106567078 other upstream 360703 41852627 ~ 41857489 (-)
LOC110492054 LOC106567113 other upstream 1059482 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 1278229 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1624811 43117471 ~ 43124619 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022533 BX005254.3 non-coding NC_007134.7 CM002907.2 36081425 ~ 36088234 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117599243 NA non-coding NC_047610.1 CM018556.1 20364055 ~ 20373180 (-)