Gene
RNA
| Item | Value |
|---|---|
| gene id | G1374966 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 41665711 ~ 41665965 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1570779 | True | 255 | lncRNA | 0.38 | 1 | 41665711 | 41665965 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110492002 | roa1 | coding | upstream | 15447 | 41620644 ~ 41650264 (+) |
| hoxc1a | NA | coding | upstream | 91096 | 41570386 ~ 41574615 (+) |
| LOC110491999 | hoxc4aa | coding | upstream | 120826 | 41542330 ~ 41544885 (+) |
| hoxc5a | hoxc5aa | coding | upstream | 132209 | 41530355 ~ 41533502 (+) |
| hoxc6a | hoxc6aa | coding | upstream | 136143 | 41526224 ~ 41529568 (+) |
| LOC110492004 | copz1 | coding | downstream | 559 | 41666524 ~ 41676868 (+) |
| lima1a | LOC106567074 | coding | downstream | 48546 | 41714511 ~ 41728197 (+) |
| igfbp6b | igfbp-6b2 | coding | downstream | 77770 | 41743735 ~ 41820580 (+) |
| pip4k2ca | LOC106567076 | coding | downstream | 158083 | 41824048 ~ 41838219 (+) |
| gpr182 | LOC106567077 | coding | downstream | 180026 | 41845991 ~ 41850222 (+) |
| G1374964 | NA | non-coding | upstream | 719 | 41664683 ~ 41664992 (+) |
| G1374963 | NA | non-coding | upstream | 1941 | 41663491 ~ 41663770 (+) |
| G1374946 | NA | non-coding | upstream | 46637 | 41618744 ~ 41619074 (+) |
| G1374945 | NA | non-coding | upstream | 47162 | 41618327 ~ 41618549 (+) |
| G1374994 | NA | non-coding | downstream | 44912 | 41710877 ~ 41711158 (+) |
| G1375035 | NA | non-coding | downstream | 177688 | 41843653 ~ 41843953 (+) |
| G1375037 | NA | non-coding | downstream | 185898 | 41851863 ~ 41852853 (+) |
| tspan31 | LOC106567080 | non-coding | downstream | 220066 | 41886011 ~ 41898541 (+) |
| LOC110492020 | LOC106567083 | non-coding | downstream | 281409 | 41938411 ~ 41952996 (+) |
| G1374558 | LOC106567063 | other | upstream | 417755 | 41244857 ~ 41247956 (+) |
| LOC110491970 | LOC106567050 | other | upstream | 822226 | 40836057 ~ 40844169 (+) |
| tac3a | tac3 | other | upstream | 1228583 | 40431869 ~ 40437128 (+) |
| znf385a | LOC106567037 | other | upstream | 1302376 | 40265875 ~ 40377336 (+) |
| G1372542 | NA | other | upstream | 1471360 | 40193812 ~ 40194351 (+) |
| G1375085 | LOC106567084 | other | downstream | 311559 | 41977524 ~ 41979064 (+) |
| G1375104 | kansl2 | other | downstream | 348535 | 42014500 ~ 42019534 (+) |
| G1375141 | tuba2 | other | downstream | 443659 | 42109624 ~ 42123709 (+) |
| LOC110492034 | LOC106567099 | other | downstream | 588067 | 42253795 ~ 42273351 (+) |
| G1376241 | LOC106567118 | other | downstream | 1101821 | 42767786 ~ 42768745 (+) |
