G1375541


Basic Information

Item Value
gene id G1375541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41838426 ~ 41841200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571447
ccaaagttaaaacagctgggcctaaaatagtataGAAGAGATTatacaaaagattttgctgtgactcttatgtgacTGTCAGAACTGTTAAGGCcccatagattgatgaggaattgaaaaactgtatggttgaaagagatggggcaaaaggagtggctaataagtctggctgcacatctgactggcggacttactgcaaattgagaaattatgtgacttaactcaacaaaaataagaagaaactgtataatgaagccaagatcaatgatataaaaacttgagtactttaaattaaattataggcagaaagacaaattcaactccatctttcatcgaatcagatggcttattcatcacaaaaccatttgatgttgccaattattttaatgattatttcattggcaaaTTTAGGCAGAAAATGCCAACAACAAACAGTAAGCaattgtattcatgcataaaaaacaaataatgaaagaaaagcattgcaagtttgaattgtgtaaagttagtgtgggagaggtggaataATGATTGTTGTCGATTagtaatgacaaacctcctggcattgacaacttagatggaaagctactgaggatggtagctgactctatagccactcctatctgtcattgtcctcaggcctggagggtagccaaagtaattccactacccactacccaagagtggtaaatcggcctttactggttctaaccgcagacctataagcttgctgccagctgtTGGAAAAAAATGATGTTTGACCAAATATGggtggaatgggtggccagtaataaactggtcctgaacataaCTAAAaataagagcattgtatttggtacaaatcactCCTTAAGTTCTTAACCTCAGCTGAATaaggtaatgaatggtgtggctgttgaacaaggtgaggagactaaattacttgccgttactttagattgtaaactgtcatggttaaaacatatagattcaatggttgtaaagatggggagaggtctggcaAAAAttaagagatgctctgcttttttgacaccacactccaaaaagcaagttctgcaggctctagttttgtctaatcttgattttTGTCTGCCGTGTGGttcagtgctgcaaggaaaggccaggttaagctgcagctgacccagaacagaacagaattgtaatcagagggctgatataaatactatacataccagtctctcttggcttagagttgaggagagactgactgcatcacttcttatttttataagaaacattagtGTGTTGAAAATTTCAAATTGCTTGCACAGTCAATTGACAcagagctctgacacacacacttatcaaacCAGACATGCCACTaagggtcttttcacagtccccgaatccagaacaaattcaagaaagcgtacaatattatatagagccctaattgcatggaacttccttccatctcatattgctttaataaacagcaaacctggtgtAAAAAAactgataaagcaacacctcacggcacaacacctctccccctatttgacctagatagtttgtgtgtatgcattaatatgtaggctacatgtgcctttAAAAAGTTTTTATGTAGTTCCGTCTTTGAgatgttcttgtctattgatgttctgtattatgtcattctgtgttatgtttcatgtggaccccaggaagagcagctgctgcttttgcaacagctaacggggatcctaataaaacaccaaataccaaatgacccaaaacacttccaggctgtgtaggggctattttaccaagaaggacagtgatgaagtgctgcatcagatgacttggcctccacaatcccccgaacTCAGCCAAATTGAGACGTTTGGGATGAGTCGaaccgtagagtgaaggaaaagtagccatgtgctcagcatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctagttgagagtgtgcaaagaatctcaaatataaaatacatttagatttgtttaacactttttgggggtTACTAGTTGAtttcatatgttatttcatagttttgatgtcttcactattattttacaatgtagaaaatagtaaaaataaagaaaaacccttgaacgagaaggcgttctaaaacttttgaccagtattGTATATGCACCAAAATGAGCTGTTTCTCTGAGTTGCCTTGTGAAAGTCTAACACTAAGAttgtattttataacttagcgAGTCATGTTGGCATAAAAACAAGcattcaaatgatgcccacctaaCTCCGATTGCAATTAGTAACGTACAGTTCTTGGATTGAGTAAACatcagtaattgtgtgatggcgaggatgcagggctgtgttccaaacaaaacaacaggtgtgctttccctagttcctcaacggcacagttCCTCAACGGCACCATCTAGGATGTTaaaaacataaatatacaccTTGGTTGAAGACTCTTCATTGAGTCATAAATGTGCATTGAAATTACATAGGAACTGtgcactttggagaggtgtgtggccacttgagCCATGTTTGAGGAGTTAGCGAGGAAACTTGGGTCAACTGAGTTCAAATCAGGAAAACCAGTAGCACGAAAATGGCTCATCTCAAATTTATATTGCAACAAATTCTTCAGAAGTAACCTGCTCCGTGCTAGGCTAACTCCGGGATAACTACATTTATCCTGAATTAAGTGTCTGAGCAgcgagttgaggaccaatgaagTCAGATTCCCTACTCTCGCAAAGATTGTCATCATTCCCTTCATTTGAGAAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571447 True 2775 lncRNA 0.39 1 41838426 41841200

Neighbor

gene id symbol gene type direction distance location
spryd3 LOC106567075 coding downstream 23842 41729589 ~ 41814584 (-)
zgc:174906 LOC106567072 coding downstream 134150 41700395 ~ 41704276 (-)
znf740b LOC106567069 coding downstream 141271 41688246 ~ 41697155 (-)
nfe2 LOC106567066 coding downstream 180689 41649197 ~ 41657737 (-)
cbx5 LOC106567067 coding downstream 193205 41637837 ~ 41645221 (-)
LOC110492013 LOC106567078 coding upstream 11427 41852627 ~ 41857489 (-)
LOC110492014 LOC106567079 coding upstream 21186 41862386 ~ 41879805 (-)
LOC110492019 LOC106567084 coding upstream 120739 41961939 ~ 42014000 (-)
LOC100301771 parp3 coding upstream 173191 42014391 ~ 42017835 (-)
LOC118939612 NA coding upstream 179026 42020226 ~ 42020361 (-)
G1375479 NA non-coding downstream 228069 41610117 ~ 41610357 (-)
G1375396 hoxc10aa non-coding downstream 344349 41489002 ~ 41494077 (-)
G1375395 NA non-coding downstream 356140 41481877 ~ 41482286 (-)
G1374850 NA non-coding downstream 381815 41456386 ~ 41456611 (-)
G1375561 NA non-coding upstream 10836 41852036 ~ 41852546 (-)
G1375576 NA non-coding upstream 23032 41864232 ~ 41952990 (-)
G1375583 LOC107714922 non-coding upstream 44809 41886009 ~ 41887418 (-)
G1375582 NA non-coding upstream 50286 41891486 ~ 41895597 (-)
G1375600 NA non-coding upstream 82183 41923383 ~ 41967093 (-)
G1375495 NA other downstream 174377 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 809020 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 983837 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1313148 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1753600 40080690 ~ 40119070 (-)
LOC110492054 LOC106567113 other upstream 712359 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 931106 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1277688 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1318312 43159512 ~ 43170042 (-)

Expression


Co-expression Network