G1375561


Basic Information

Item Value
gene id G1375561
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41852036 ~ 41852546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571471
CATGATACTGTGGTTCATGTAGACTGTATGTATTAGTGATCAGATGatatgaacaaaacaaacatgataCTGTGGTTCATGTAGACTGTATGTATTAGTGATCAGATGatatgaacaaaacaaacatgataCTGTGGTTCATGTAGACTGTATGTATTAGTGATCAGATGatatgaacaaaacaaacatgataCTGTGGTTCATGTAGACTGTATGTATTAGTGATCAGATGATATGAACTAAACAAACAGTGGCTTCCAGCATTTCAAAAGCACCACATTATGCTCTGTAGACTTGCATACTTTGGATTTGATGTTTAAACGTAACTCGTGTTTGTGTTCTATTTGGTGTCTTACCTCATTATGAAACGTTTTATTCGATTATTGCTGTTTTTTCATTGTAATTTGTATGTACTATTTTAGTGCAAACTATGAACGTTTTCcattatctatactgaacaaaaatataaatgcaacatgtaaagtattggtcccatgaaataaaagttccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571471 True 511 lncRNA 0.32 1 41852036 41852546

Neighbor

gene id symbol gene type direction distance location
spryd3 LOC106567075 coding downstream 37452 41729589 ~ 41814584 (-)
zgc:174906 LOC106567072 coding downstream 147760 41700395 ~ 41704276 (-)
znf740b LOC106567069 coding downstream 154881 41688246 ~ 41697155 (-)
nfe2 LOC106567066 coding downstream 194299 41649197 ~ 41657737 (-)
cbx5 LOC106567067 coding downstream 206815 41637837 ~ 41645221 (-)
LOC110492013 LOC106567078 coding upstream 81 41852627 ~ 41857489 (-)
LOC110492014 LOC106567079 coding upstream 9840 41862386 ~ 41879805 (-)
LOC110492019 LOC106567084 coding upstream 109393 41961939 ~ 42014000 (-)
LOC100301771 parp3 coding upstream 161845 42014391 ~ 42017835 (-)
LOC118939612 NA coding upstream 167680 42020226 ~ 42020361 (-)
G1375541 NA non-coding downstream 10836 41838426 ~ 41841200 (-)
G1375479 NA non-coding downstream 241679 41610117 ~ 41610357 (-)
G1375396 hoxc10aa non-coding downstream 357959 41489002 ~ 41494077 (-)
G1375395 NA non-coding downstream 369750 41481877 ~ 41482286 (-)
G1375576 NA non-coding upstream 11686 41864232 ~ 41952990 (-)
G1375583 LOC107714922 non-coding upstream 33463 41886009 ~ 41887418 (-)
G1375582 NA non-coding upstream 38940 41891486 ~ 41895597 (-)
G1375600 NA non-coding upstream 70837 41923383 ~ 41967093 (-)
G1375574 NA non-coding upstream 86078 41938624 ~ 41947710 (-)
G1375495 NA other downstream 187987 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 822630 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 997447 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1326758 40522997 ~ 40525278 (-)
LOC110491948 LOC106567031 other downstream 1767210 40080690 ~ 40119070 (-)
LOC110492054 LOC106567113 other upstream 701013 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 919760 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1266342 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1306966 43159512 ~ 43170042 (-)

Expression


Co-expression Network