G1375576


Basic Information

Item Value
gene id G1375576
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41864232 ~ 41952990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571489
CCAACTTTATTTTGGCAACTTTTGCCCAGTTTGCGTCCAATATACACTTATTTCTTGCCAAAAGCTATAGTGTAGGCCTAACATTTGtttttatccagagtgatttacaggagcaattccgggttaagtgccttgctcaaggcacatcgacagatttttcacctagtatGCTCAGTGATTCCTTTCGGTTACGAGCCCAACGCTCTTCGCCGCTAGACTACCTGGCGCCCTATTGGAAAGTATGACCCATCTTACACTGAACAACAATGTATAGGCCTAAATGTGTGTTCATGATTTACAATTTACATGTAGCTTTATTTTGTTTAATTACCAACAATGTCAATGAGAACAACTAAATCTACACAATATCAACAACCAGATATCTTTGGTTAATCATTAGGATtggtaaacattcattcaaatatCTTAAGTGATCAATGTACACAATAAAAACGGACATAAAACATTATATAAACAACTTGATTGTACCCACATAAAATAATCCTGGTTTCCATCATTATTTGTGGAATGGCAATATACTACAGTAACAAACATTTACTTGTTTTAACATTTACCTATTTAACATTTAACACAAACCCCCTGAATTTTGATTATTGTTTTTTGATAACACAATGTCGTTGGTATCATCTACGATGATTCGAGGAGTAATGTTTGAAAGGCACAGTTTGGAGGAAAATATGTGATTAACTTCACACAATCCggcagagtagcctagtggttagagcgttggactagtaaccggaaggttgcgagttcaaacccccgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571489 True 788 lncRNA 0.37 2 41864232 41952990

Neighbor

gene id symbol gene type direction distance location
LOC110492013 LOC106567078 coding downstream 6743 41852627 ~ 41857489 (-)
spryd3 LOC106567075 coding downstream 49648 41729589 ~ 41814584 (-)
zgc:174906 LOC106567072 coding downstream 159956 41700395 ~ 41704276 (-)
znf740b LOC106567069 coding downstream 167077 41688246 ~ 41697155 (-)
nfe2 LOC106567066 coding downstream 206495 41649197 ~ 41657737 (-)
LOC110492019 LOC106567084 coding upstream 8949 41961939 ~ 42014000 (-)
LOC100301771 parp3 coding upstream 61401 42014391 ~ 42017835 (-)
LOC118939612 NA coding upstream 67236 42020226 ~ 42020361 (-)
LOC110492022 ccnt1 coding upstream 93159 42046149 ~ 42054227 (-)
LOC110492023 LOC106567088 coding upstream 107003 42059993 ~ 42064731 (-)
G1375561 NA non-coding downstream 11686 41852036 ~ 41852546 (-)
G1375541 NA non-coding downstream 23032 41838426 ~ 41841200 (-)
G1375479 NA non-coding downstream 253875 41610117 ~ 41610357 (-)
G1375396 hoxc10aa non-coding downstream 370155 41489002 ~ 41494077 (-)
G1375626 NA non-coding upstream 30794 41983784 ~ 41984090 (-)
G1375627 NA non-coding upstream 31391 41984381 ~ 41984608 (-)
G1375630 NA non-coding upstream 43935 41996925 ~ 41997216 (-)
G1375631 NA non-coding upstream 44860 41997850 ~ 41998078 (-)
G1375632 NA non-coding upstream 46103 41999093 ~ 41999321 (-)
G1375495 NA other downstream 200183 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 834826 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1009643 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1338954 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 600569 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 819316 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1165898 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1206522 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1264819 43217803 ~ 43243705 (-)

Expression


Co-expression Network