G1375600


Basic Information

Item Value
gene id G1375600
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 41923383 ~ 41967093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571526
ttttttaaagcagtcaccctttgccttgatgacagctttgcacactcttggcattctctcaatcagcttcatggggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaaatgttaatttgtggaatttctttccttaatgtgtttgagcctatcctttgtgttgtgacaaggtaggggtggtatacagaagatagccacatttggtaaaataccaagtccatattatggcaagaacagctcaaataagcaaagagaaacgacagtccatcattactttaagacatgaaggtcagtcaagaacttttaaagtttattcaggtgcagttgcaaaaaccatccagcgctatgatgaaactggctctcataaggaccgccacaggaaaggtagacccagaattacctctgctgcagaggataagttcattagagttaccagccaaagaaattgcaacccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagaatcaggccttcatggtataATTActgcactactaaaggacaccaataagaagagacttgcttgggccaagaaacacgagcaatggacattagaccggtggaaatctgtcctttggtccaaatctgagatttttggttccaaccgcagtgtctttgtgagacgtagagtaggtgaatggatgatctccgcatgtgtatttcccaccgtgaagcatggaggtggtaaTGTTatgctgctttgctggtgacagtgtctgtgatttatttagaattcaaggcacacttaactagcacagcattctgcagtgacatgccattccatctggtttgtgcttagtgggactataatttgtttttcaacaggacaataacccaaaacacacctcaagactgttggaaaagcattccaggtgaacctggttgagagaatgccaagag

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571526 True 965 lncRNA 0.42 2 41923383 41967093

Neighbor

gene id symbol gene type direction distance location
LOC110492014 LOC106567079 coding downstream 43578 41862386 ~ 41879805 (-)
LOC110492013 LOC106567078 coding downstream 65894 41852627 ~ 41857489 (-)
spryd3 LOC106567075 coding downstream 108799 41729589 ~ 41814584 (-)
zgc:174906 LOC106567072 coding downstream 219107 41700395 ~ 41704276 (-)
znf740b LOC106567069 coding downstream 226228 41688246 ~ 41697155 (-)
LOC100301771 parp3 coding upstream 47298 42014391 ~ 42017835 (-)
LOC118939612 NA coding upstream 53133 42020226 ~ 42020361 (-)
LOC110492022 ccnt1 coding upstream 79056 42046149 ~ 42054227 (-)
LOC110492023 LOC106567088 coding upstream 92900 42059993 ~ 42064731 (-)
LOC110492025 LOC105013598 coding upstream 117968 42085061 ~ 42088234 (-)
G1375582 NA non-coding downstream 27786 41891486 ~ 41895597 (-)
G1375583 LOC107714922 non-coding downstream 35965 41886009 ~ 41887418 (-)
G1375561 NA non-coding downstream 70837 41852036 ~ 41852546 (-)
G1375541 NA non-coding downstream 82183 41838426 ~ 41841200 (-)
G1375626 NA non-coding upstream 16691 41983784 ~ 41984090 (-)
G1375627 NA non-coding upstream 17288 41984381 ~ 41984608 (-)
G1375630 NA non-coding upstream 29832 41996925 ~ 41997216 (-)
G1375631 NA non-coding upstream 30757 41997850 ~ 41998078 (-)
G1375632 NA non-coding upstream 32000 41999093 ~ 41999321 (-)
G1375495 NA other downstream 259334 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 893977 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1068794 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1398105 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 586466 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 805213 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 1151795 43117471 ~ 43124619 (-)
G1376748 NA other upstream 1192419 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 1250716 43217803 ~ 43243705 (-)

Expression


Co-expression Network