G1375841 (LOC106567107)


Basic Information

Item Value
gene id G1375841
gene name LOC106567107
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42399955 ~ 42406935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571798
TGCAATTTAATAATGTGACCATAATGCAATATTCATGTGATAATTATAATCAAACATATGTTATTTGGAGGCAATGTTTGGACAGTGTGACCAGACAAATACAAAACCTGGTTACACCTGTTTAAGCCAAGTTTGTGGGACATTTTAAACTACCAaagcagccgtttttatctcaatatcaaatcatttctagctaacaattaagtaccttactgggattgttttcaataaaaattgtcaaaaagaaaaaaaaaatatattcttagcaaagagcaatttctcaagcaagaattttgctaggactgtctgggaatgttctgagtgggaggggaaaactgaaaactatctgttattggcagagaggtttggaactgcattaaccaatgatgatgatgacatcaagcaggccaaaactccatcccaccaaaacaggctgaaatttcaggcagtcttttcaagcACCTCTTACACTAAAAAGGCATGTATTAtttcagtattattccaacctcatagtggaTATATACATAAAAAACAGGAAAAACACTTTTGACTCTCCTGGGCCTTTTGACTTTACTGATAGTGTTTAAGAGGCACATTTTCTATTCTTAATAAATTACATGAGTTGCTTCAAGATGGCAAAGCATTGGATTTGAGTATACATTTGGTACTATATGTGTAGGGGCATGAGGGTCCCTGATAGTTTTGACATTTCATGTAATTTCAGCATAACTTTACACTtatcaataataataaaaaacaggccagcattgttgtgtattgttgcaTTGTTGTCTTTTTGGAACAAAGTTATACAAAACAATTTGCACAGCATTGTGTGATCTCCAATTCATCCCACTGGCATTCCCAACAGCAATATTTAGGGTAGGGCTTTGTCAATAGCATAAGTCTGCACACATACGTTCAACTTCATATGTACATGCAATTCTTTCATTATTATTGTTAGATTTTTAAATTACACAGCTGAGAAACttacaaagcaagtgaaatacaaCTAAATCAGTCCCACAACATGCTACAGTCACATTAATTAAATTGACAACAAAAGCTTCTCTCTGACAATTAGCAGTATTACTTGTACAAACAAACCCCTTAATTGGCACTCATTGAAACATGCGTGATCTGAGAATTTATCAAGGCAAAAGAGAAGTATTGACAGTACATCATGCAGTTTCCTTTGGGCAAGTGCAGATGAAGAGAGGCTATGGAATGTACCGCATTGCAAGATAAAAGGGTAACACAGACATAGAAACACATGGATGGTGTCAAAGGAACACAGGCCgtgtcaggggaaggccctaaaaattgtccgtCTCCAactacccaagtcatagactgttctctctgctacagcacggcaagcgtTACCGACGTACCACGTTTGGAACCAACAGCTACCTGgcctatctgcattgaccctttttgcactaactcatATGACTGATCACATAAGCTGCTGCTAATGTTgactatctatcctgttgcctagtcattttatccctacctatatgtacacatTTACTTCATACCCCTGCTtatctactcagtactggtacccaggtTATCATTACTCGTGTATTTATTCCGTTattatttctctctgcattgttgggaagggcccataagaaagcatttcactgttgtttacgaacaatgtgacgaatacaatgtgatttgacaAATGCTAAGAGGATGGGAATGCTCAATGCTGAGAATCAGAGAACAGGGTGGAGGTGGCTAAAATAAGTAAGTAGGCAAATGACAATAGAACATATCAAATAACTCATGAGCAAATCAATGTGGAGGGAACATAAGTTAGGGGAGTGGAGGggttagcctggttccagatctgtttgtgtcgtCTTGCCAACTCACATGGTCAATGTCACACGACAATGACCATAGGGGtaggcaagacagcacaaacggATCTGGGACCGGGCTCAGGGGCGTTCTCTTGTCTTCATTACTCCGACTGAGGCACTGAGATTGAGGGGCCTTTAGGGTCGTCAAAGCGGTCCATGGAGCGTAGCTGCATGATCATGTGCATGCCGTAGGTGAGGATTAGCAGCATCAGCAGAGAGGTGATCAGGCCCATCCAGATCCCTGGTGTGAAGAAGCCAGCACAGTCACTGGCATAGGAGAAATCTGTTGTcctgttcagtatactgaagcCTTGGATCTGGAAGTCAGTGAAGAGAATCCTCCACTGGGTAGCATTCTGAGTGCGGGGCACAAGCAGTGCATTACGGAAGTTGTTGACATTCTGGCAGTGGAAGGAGTACTCTGCGGGGGCGTAGATGCCCCGGCTGCCATTGTAGATGGCTGTATCGGCATTGAATAGCAGTTCCACTGTGTCCAGGGTGAACCAGTTTCGTGCAGACACGGGGTAGCGCCGCTGGCTCATGGAGAAGATGAGACGGAAGAGATTGTATGTTGGAACAGAACTTCCATAATCAAGGACAAGCCGTGAATTTGTTTCATTACAGAAGGACTCAGCCGTACTCACAGAGCCACCTGGAGCAAAGGTCAATGGACCGAGGTCAATCCATTCCAGGTTATTAAAGCTGACGTTGAGATTCTGGGCCCAGAGCATGATGCAAGGGCCACTAGTAGTGTTAAACATCAAAGGAGGTTTGACCTCATCAACAACCGCCTGCAGCAAGGACCGGCCCATAGAAGACTGGCCAACCATGGATGGCTCCTCAATCACTCGTGAGGGCTTGAGTCCAGTGTAAATAGCAGTGTAGGGAACACCCTGGGCTTTCATGATGCTCAGAACTTTACCAATGACCTCATCATTGCTACGCAGGACTTCCTTACAGGACAGATAAGCACCAGTAGAATAGGGCAGTATGATAAGCAGCAGAGTGTTGTCTGATGCATTGAGTCGGAGATGCGCCAGTGTGTCTGGGTCTACGCTGAGTGGGGAGACACCCAGCTTCTCCTGTAGCAGACCTGGGACTGCACTAGCACCAAGCCATGACAGGGCAGGCAGCACCAATGGTGAAGAGGAAGACTGTAATGCAGACTCCAGGTTGGGAAAGGCACTCTCATGATTGTTTCCAAAAACGCCCCCATACCTTGTGAAGTCATCTTTGCTCAGCTTGTCCTGTAGGAAGAGAAGCACGTTGTGTGGGGCAGACCCCAGAGCAGAATTTAGGTAGGACACCAGCTGGTCATTAGATATTATGTGACCAGCAGCTGGAGATGCCATGGGTGGCAAGGTGTACCCTTCACTGGACCACATTACAAGTGGTACTTGACTGCTGCAATGTCCAGTAGATAACAGGGCAAATAAAAGAGCAATAAAGGCCATGATAGTACGCAATTTACTTGACGACTCAGATCCTGCCATGGTAGGTTTTCTTTTCCGTAAAGTCCAAGTCACGTGGGGTAAATCAGCTGACTGTCATGGGAGTCAATGGTACACTTCCTTCTCACGCAGCCTGCCCTGACC
>TU1571799
TGCAATTTAATAATGTGACCATAATGCAATATTCATGTGATAATTATAATCAAACATATGTTATTTGGAGGCAATGTTTGGACAGTGTGACCAGACAAATACAAAACCTGGTTACACCTGTTTAAGCCAAGTTTGTGGGACATTTTAAACTACCAaagcagccgtttttatctcaatatcaaatcatttctagctaacaattaagtaccttactgggattgttttcaataaaaattgtcaaaaagaaaaaaaaaatatattcttagcaaagagcaatttctcaagcaagaattttgctaggactgtctgggaatgttctgagtgggaggggaaaactgaaaactatctgttattggcagagaggtttggaactgcattaaccaatgatgatgatgacatcaagcaggccaaaactccatcccaccaaaacaggctgaaatttcaggcagtcttttcaagcACCTCTTACACTAAAAAGGCATGTATTAtttcagtattattccaacctcatagtggaTATATACATAAAAAACAGGAAAAACACTTTTGACTCTCCTGGGCCTTTTGACTTTACTGATAGTGTTTAAGAGGCACATTTTCTATTCTTAATAAATTACATGAGTTGCTTCAAGATGGCAAAGCATTGGATTTGAGTATACATTTGGTACTATATGTGTAGGGGCATGAGGGTCCCTGATAGTTTTGACATTTCATGTAATTTCAGCATAACTTTACACTtatcaataataataaaaaacaggccagcattgttgtgtattgttgcaTTGTTGTCTTTTTGGAACAAAGTTATACAAAACAATTTGCACAGCATTGTGTGATCTCCAATTCATCCCACTGGCATTCCCAACAGCAATATTTAGGGTAGGGCTTTGTCAATAGCATAAGTCTGCACACATACGTTCAACTTCATATGTACATGCAATTCTTTCATTATTATTGTTAGATTTTTAAATTACACAGCTGAGAAACttacaaagcaagtgaaatacaaCTAAATCAGTCCCACAACATGCTACAGTCACATTAATTAAATTGACAACAAAAGCTTCTCTCTGACAATTAGCAGTATTACTTGTACAAACAAACCCCTTAATTGGCACTCATTGAAACATGCGTGATCTGAGAATTTATCAAGGCAAAAGAGAAGTATTGACAGTACATCATGCAGTTTCCTTTGGGCAAGTGCAGATGAAGAGAGGCTATGGAATGTACCGCATTGCAAGATAAAAGGGTAACACAGACATAGAAACACATGGATGGTGTCAAAGGAACACAGGCCgtgtcaggggaaggccctaaaaattgtccgtCTCCAactacccaagtcatagactgttctctctgctacagcacggcaagcgtTACCGACGTACCACGTTTGGAACCAACAGCTACCTGgcctatctgcattgaccctttttgcactaactcatATGACTGATCACATAAGCTGCTGCTAATGTTgactatctatcctgttgcctagtcattttatccctacctatatgtacacatTTACTTCATACCCCTGCTtatctactcagtactggtacccaggtTATCATTACTCGTGTATTTATTCCGTTattatttctctctgcattgttgggaagggcccataagaaagcatttcactgttgtttacgaacaatgtgacgaatacaatgtgatttgacaAATGCTAAGAGGATGGGAATGCTCAATGCTGAGAATCAGAGAACAGGGTGGAGGTGGCTAAAATAAGTAAGTAGGCAAATGACAATAGAACATATCAAATAACTCATGAGCAAATCAATGTGGAGGGAACATAAGTTAGGGGAGTGGAGGggttagcctggttccagatctgtttgtgtcgtCTTGCCAACTCACATGGTCAATGTCACACGACAATGACCATAGGGGtaggcaagacagcacaaacggATCTGGGACCGGGCTCAGGGGCGTTCTCTTGTCTTCATTACTCCGACTGAGGCACTGAGATTGAGGGGCCTTTAGGGTCGTCAAAGCGGTCCATGGAGCGTAGCTGCATGATCATGTGCATGCCGTAGGTGAGGATTAGCAGCATCAGCAGAGAGGTGATCAGGCCCATCCAGATCCCTGGTGTGAAGAAGCCAGCACAGTCACTGGCATAGGAGAAATCTGTTGTcctgttcagtatactgaagcCTTGGATCTGGAAGTCAGTGAAGAGAATCCTCCACTGGGTAGCATTCTGAGTGCGGGGCACAAGCAGTGCATTACGGAAGTTGTTGACATTCTGGCAGTGGAAGGAGTACTCTGCGGGGGCGTAGATGCCCCGGCTGCCATTGTAGATGGCTGTATCGGCATTGAATAGCAGTTCCACTGTGTCCAGGGTGAACCAGTTTCGTGCAGACACGGGGTAGCGCCGCTGGCTCATGGAGAAGATGAGACGGAAGAGATTGTATGTTGGAACAGAACTTCCATAATCAAGGACAAGCCGTGAATTTGTTTCATTACAGAAGGACTCAGCCGTACTCACAGAGCCACCTGGAGCAAAGGTCAATGGACCGAGGTCAATCCATTCCAGGTTATTAAAGCTGACGTTGAGATTCTGGGCCCAGAGCATGATGCAAGGGCCACTAGTAGTGTTAAACATCAAAGGAGGTTTGACCTCATCAACAACCGCCTGCAGCAAGGACCGGCCCATAGAAGACTGGCCAACCATGGATGGCTCCTCAATCACTCGTGAGGGCTTGAGTCCAGTGTAAATAGCAGTGTAGGGAACACCCTGGGCTTTCATGATGCTCAGAACTTTACCAATGACCTCATCATTGCTACGCAGGACTTCCTTACAGGACAGATAAGCACTGGAACATAAACAAAGAGCATGAATATACAATACATGCTTAAGTTACTGTACGATTGTGAATCAATCACATAGTATTTTTCCCAAAACACTGGACTCTAGAAACATTTGGTTGAATTGTATTACCCAGTAGAATAGGGCAGTATGATAAGCAGCAGAGTGTTGTCTGATGCATTGAGTCGGAGATGCGCCAGTGTGTCTGGGTCTACGCTGAGTGGGGAGACACCCAGCTTCTCCTGTAGCAGACCTGGGACTGCACTAGCACCAAGCCATGACAGGGCAGGCAGCACCAATGGTGAAGAGGAAGACTGTAATGCAGACTGGGAGAGAGTCTGAATTTATAAAGTGTCTCAAAGTAGCGCTGCTGATGTAGGATTAGACCCCCACTGTccatgttatcgttactcattgtgatctaaaacctctcctctgagaccccccagctgttccctgtaTGATCTATTCCAGAGCAAGCACACCTGATTTagcttgtcaactaatcatcaagccattgaataggtgaatcaggtgagctagttcagggctacaacaaaattgTGAAACGTCTGGGGGTCCCAGAgtagaggtttgagaaccactgatcATACATCACCACTCTAACACTGAGATgacactttatgaatatgggCACTGATCATATTAGTATCCCAATACCCAGCCTCACCTCAAAAGGATAGAATACTTACCTCCAGGTTGGGAAAGGCACTCTCATGATTGTTTCCAAAAACGCCCCCATACCTTGTGAAGTCATCTTTGCTCAGCTTGTCCTGTAGGAAGAGAAGCACGTTGTGTGGGGCAGACCCCAGAGCAGAATTTAGGTAGGACACCAGCTGGTCATTAGATATTATGTGACCAGCAGCTGGAGATGCCATGGGTGGCAAGGTGTACCCTTCACTGGACCACATTACAAGTGGTACTTGACTGCTGCAATGTCCAGTAGATAACAGGGCAAATAAAAGAGCAATAAAGGCCATGATAGTACGCAATTTACTTGACGACTCAGATCCTGCCATGGTAGGTTTTCTTTTCCGTAAAGTCCAAGTCACGTGGGGTAAATCAGCTGACTGTCATGGGAGTCAATGGTACACTTCCTTCTCACGCAGCCTGCCCTGACC

Function

NR:

description
V-type proton ATPase subunit S1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571798 False 3478 lncRNA 0.44 10 42399955 42406935
TU1571799 True 3990 lncRNA 0.43 8 42399955 42406935

Neighbor

gene id symbol gene type direction distance location
LOC110492045 LOC106567106 coding downstream 1082 42387236 ~ 42398873 (-)
LOC110492036 LOC106567102 coding downstream 42381 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 88776 42276720 ~ 42311179 (-)
LOC118939538 NA coding downstream 169190 42098117 ~ 42230765 (-)
LOC110492030 LOC106567094 coding downstream 223482 42174010 ~ 42176473 (-)
LOC110492048 taf8 coding upstream 2419 42409354 ~ 42415213 (-)
LOC110492049 LOC106572624 coding upstream 8305 42415240 ~ 42416592 (-)
LOC110492050 LOC106567110 coding upstream 13280 42420215 ~ 42430379 (-)
LOC110492051 LOC106567111 coding upstream 38838 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 68764 42475699 ~ 42526905 (-)
G1375833 NA non-coding downstream 19383 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 21024 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 21425 42378286 ~ 42378530 (-)
G1375828 NA non-coding downstream 29359 42370261 ~ 42370596 (-)
G1375827 NA non-coding downstream 31108 42368527 ~ 42368847 (-)
G1375845 NA non-coding upstream 103 42407038 ~ 42407894 (-)
G1375853 NA non-coding upstream 26045 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 27490 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 28311 42435246 ~ 42436720 (-)
G1375856 NA non-coding upstream 30925 42437860 ~ 42438207 (-)
LOC110492013 LOC106567078 other downstream 544594 41852627 ~ 41857489 (-)
G1375495 NA other downstream 735906 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1370549 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1545366 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1874677 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 146624 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 365371 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 711953 43117471 ~ 43124619 (-)
G1376748 NA other upstream 752577 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 810874 43217803 ~ 43243705 (-)

Expression


Co-expression Network