G1375845


Basic Information

Item Value
gene id G1375845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 42407038 ~ 42407894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1571805
AGGTTGGCTATCAACATAAATCATGCATATTCTCATAAGGCTTTAACATCATACCTGAGCACAGGGCAGAAACCGTGCAGACGTCCTTGCAGCAAGAGTGTATCCTTTCTTACTCTCAGGTCTCTTCTGTACATCATATAGAATGGTACCAACCTGTTGGAACAATAACTAACGTGAAAAACCTCACAAGAGAATGTAAGGATTTCCTAATGTTATTTGAACTGGCTGTTTGAGTAGCTTCTGCAATGCATTATTTATTACCATGCGGAAAATAACCAAATTGGTTTATTTGAGATCAACAGGTTAACAGATCTTTATGAAGAGTGTGGATAGGTCATTGAAAGAACATGACAGTAAACTGCTCAGGAAAAACTCACATGATTGTCATAGCAGCCGGGGCCACGGTGTGGGGCTCCCTCAAGTGACAGCTTATTGCCCAGCCGGTTAGGTGCACAGTGGGTCGGAAACAACTTCCGTTCCTGGCAGCTGCCAAAGGCAACGCACCGCAGGGGAGCTACAAATTCAGAGATAAGATTGGACATTTTTAATTGACGCTAATAGATAAAAACGCAATGGGTGGACGCTAATCATTTTACCTGCATCCAGTGCCGCCATGTTCCCTCTTCCTTTTGTTTATATTCTTACCGGTAACGATGGGAACCAGGTGGATGAATGGTATAGAAGGGATCCagtttttgtcaaattaacgtcaAAGGTAGATTTTTTTGGTGCGTGGGGATTTAAACTAACCCCAAGTAACCATTTTCTTAACCTTCtactaacctgctacgaaaagtcaaatCTGACGTTATTTTGACAAAAACTGGATCCTTCCAGACATGACAGGATGGATGCGC

Function

NR:

description
protein pitchfork isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1571805 True 857 lncRNA 0.42 1 42407038 42407894

Neighbor

gene id symbol gene type direction distance location
LOC110492045 LOC106567106 coding downstream 8165 42387236 ~ 42398873 (-)
LOC110492036 LOC106567102 coding downstream 49464 42331636 ~ 42357574 (-)
LOC100136795 LOC106567100 coding downstream 95859 42276720 ~ 42311179 (-)
LOC118939538 NA coding downstream 176273 42098117 ~ 42230765 (-)
LOC110492030 LOC106567094 coding downstream 230565 42174010 ~ 42176473 (-)
LOC110492048 taf8 coding upstream 1460 42409354 ~ 42415213 (-)
LOC110492049 LOC106572624 coding upstream 7346 42415240 ~ 42416592 (-)
LOC110492050 LOC106567110 coding upstream 12321 42420215 ~ 42430379 (-)
LOC110492051 LOC106567111 coding upstream 37879 42445773 ~ 42468841 (-)
src LOC106567112 coding upstream 67805 42475699 ~ 42526905 (-)
G1375841 LOC106567107 non-coding downstream 103 42399955 ~ 42406935 (-)
G1375833 NA non-coding downstream 26466 42380249 ~ 42380572 (-)
G1375832 NA non-coding downstream 28107 42378635 ~ 42378931 (-)
G1375831 LOC106567105 non-coding downstream 28508 42378286 ~ 42378530 (-)
G1375828 NA non-coding downstream 36442 42370261 ~ 42370596 (-)
G1375853 NA non-coding upstream 25086 42432980 ~ 42433428 (-)
G1375854 NA non-coding upstream 26531 42434425 ~ 42434650 (-)
G1375855 NA non-coding upstream 27352 42435246 ~ 42436720 (-)
G1375856 NA non-coding upstream 29966 42437860 ~ 42438207 (-)
G1375859 NA non-coding upstream 32054 42439948 ~ 42441684 (-)
LOC110492013 LOC106567078 other downstream 551677 41852627 ~ 41857489 (-)
G1375495 NA other downstream 742989 41663748 ~ 41664049 (-)
G1374491 LOC106567058 other downstream 1377632 41026775 ~ 41029406 (-)
rps26 LOC106567051 other downstream 1552449 40852758 ~ 40854671 (-)
G1374237 LOC106567042 other downstream 1881760 40522997 ~ 40525278 (-)
LOC110492054 LOC106567113 other upstream 145665 42548642 ~ 42569532 (-)
LOC110492059 LOC106567118 other upstream 364412 42767849 ~ 42773348 (-)
LOC110491060 LOC106567122 other upstream 710994 43117471 ~ 43124619 (-)
G1376748 NA other upstream 751618 43159512 ~ 43170042 (-)
LOC110492063 LOC106567124 other upstream 809915 43217803 ~ 43243705 (-)

Expression


Co-expression Network