G1376991


Basic Information

Item Value
gene id G1376991
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43337162 ~ 43338555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1573061
GGATCATACAGTAAAAGGGGATAAGAAGTCACACAAGTATTACGAGGTGTTGTCTTTGTGTCCTGAAGAGGGAAGTGTTGTTCAGGTTTATTTTTCTAATGTATCAACCTGAAACTCACAGTCCTAGTAGATTTTATGGGAAGCCACACGAGAGTTTTATGAGTGTATATGGACACAGTTTAGGAGCctaatgacaaacacacacagattgaGTGAACCCAATCATATCAAGTGATTAGACAGGTGGGACTCTAAATTAGTCTCCCACCCCCTACACTTATGCAAGCATGTCTCTTTACAAGGAAGGCTCTTGTCTGATATGGTTTTGTGGTCATTGATTGTTTTGACTTGGAAGAGAGAACAAGGACTCATTGTGAGCATACTCTACATTCACATACAACTGTGGAGACTTGCTAATTTGTTGTGGGCCATTTATATAATCTCCCTATTTCCCAGCTTGCTTTGTTTACCATTTCCCTCCCCTTTGTTGGGGAGGGGAGCATACAAACAACTGGAGCTGCATTGTGGTCACGTAATTATTTTAGCTTTGTCAGGGCAGACATCTTTCCTGAGAGTACCCATGCAACCCAATGAGAAATCTCCCAAATTGGAGGTCCCACTCAAGACAGTCCAAATAGAGCCTAAAGCCCGGGAATAAACACATAGGATTTATCTGATGAAATCCCCTgctctcactgtagtagactaaaCCATTGGGCCATTTTTCATGATTCATGCACAATGGAGATTGGTGTTAATGTAGAAATAGAGGAATGCATTTACTATGAGGGCATGTTCTTCTTGCCTAGTGGTCAATCCATCACAGTTCagccaaaaaaaaatgttttatccttCTTGTCTTGTAATGCTGGTAGGATTGGCACTGTTGGAAGTCAACGGTTTACAGTAAGCTGGAGATTTGTCATCTGATTCTATCATTTCCCACCACCCACCAAGGGACATGGGCTGCCTTTGCTTTAATTGAAACAACTGACCAATCCTTCTGCGTGGAATCCCTATACAACCACTAATATGAATAAAATGCTGAGGACTGAAAGGGCTTCTTGGGTCTCGAATGTCATCTAAGAGAAGTGTAAAGACATTACAGGTTAGATCATGCAGATTCTAGGATTTTTTTTGCTGGTGAACTATTGGTCAATCTTGGGAATGACCTTTCCCTAAACCAATCTGCCTAAATCAGAATGGCATGTGACTGTGTGAACTACTGGCTTTCAATACAAACATCCAAGCACAACAAGACATTTTTGTTAGTTTCAAAGTGTGCATAATAAACATAGAGACAATGGGTTTGTAAAGGGGGGAGGGCATAGCCCACAATGGCAACTTCTGCCCCAAAAGTAGCAGAGTCCATGGGAATCAAATATAATATTTAG
>TU1573055
GGATCATACAGTAAAAGGGGATAAGAAGTCACACAAGTATTACGAGGTGTTGTCTTTGTGTCCTGAAGAGGGAAGTGTTGTTCAGGTTTATTTTTCTAATGTATCAACCTGAAACTCACAGTCCTAGTAGATTTTATGGGAAGCCACACGAGAGTTTTATGAGTGTATATGGACACAGTTTAGGAGCctaatgacaaacacacacagattgaGTGAACCCAATCATATCAAGTGATTAGACAGGTGGGACTCTAAATTAGTCTCCCACCCCCTACACTTATGCAAGCATGTCTCTTTACAAGGAAGGCTCTTGTCTGATATGGTTTTGTGGTCATTGATTGTTTTGACTTGGAAGAGAGAACAAGGACTCATTGTGAGCATACTCTACATTCACATACAACTGTGGAGACTTGCTAATTTGTTGTGGGCCATTTATATAATCTCCCTATTTCCCAGCTTGCTTTGTTTACCATTTCCCTCCCCTTTGTTGGGGAGGGGAGCATACAAACAACTGGAGCTGCATTGTGGTCACGTAATTATTTTAGCTTTGTCAGGGCAGACATCTTTCCTGAGAGTACCCATGCAACCCAATGAGAAATCTCCCAAATTGGAGGTCCCACTCAAGACAGTCCAAATAGAGCCTAAAGCCCGGGAATAAACACATAGGATTTATCTGATGAAATCCCCTgctctcactgtagtagactaaaCCATTGGGCCATTTTTCATGATTCATGCACAATGGAGATTGGTGTTAATGTAGAAATAGAGGAATGCATTTACTATGAGGGCATGTTCTTCTTGCCTAGTGGTCAATCCATCACAGTTCagccaaaaaaaaatgttttatccttCTTGTCTTGTAATGCTGGTAGGATTGGCACTGTTGGAAGTCAACGGTTTACAGTAAGCTGGAGATTTGTCATCTGATTCTATCATTTCCCACCACCCACCAAGGGACATGGGCTGCCTTTGCTTTAATTGAAACAACTGACCAATCCTTCTGCGTGGAATCCCTATACAACCACTAATATGAATAAAATGCTGAGGACTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1573061 False 1394 lncRNA 0.41 1 43337162 43338555
TU1573055 True 1057 TUCP 0.41 1 43337499 43338555

Neighbor

gene id symbol gene type direction distance location
LOC110492064 LOC106567125 coding downstream 10662 43253172 ~ 43326500 (-)
LOC110492063 LOC106567124 coding downstream 93457 43217803 ~ 43243705 (-)
LOC110492905 LOC106567327 coding downstream 124677 43210914 ~ 43212485 (-)
LOC110491060 LOC106567122 coding downstream 212543 43117471 ~ 43124619 (-)
LOC110492062 LOC106567121 coding downstream 336267 42985882 ~ 43000895 (-)
nol9 nol9 coding upstream 2080 43340635 ~ 43347748 (-)
LOC110492067 klhl21 coding upstream 17940 43356495 ~ 43375265 (-)
LOC110492068 LOC106567131 coding upstream 158627 43497182 ~ 43503930 (-)
LOC110492069 LOC106567132 coding upstream 196139 43534694 ~ 43564442 (-)
LOC110492071 LOC106567135 coding upstream 239981 43578536 ~ 43599139 (-)
G1376901 NA non-coding downstream 46408 43221431 ~ 43290754 (-)
G1376878 NA non-coding downstream 144882 43191956 ~ 43192280 (-)
G1376873 NA non-coding downstream 152754 43184109 ~ 43184408 (-)
G1376765 NA non-coding downstream 163472 43173408 ~ 43173690 (-)
G1376993 zbtb48 non-coding upstream 9602 43348157 ~ 43348953 (-)
G1376994 zbtb48 non-coding upstream 11015 43349570 ~ 43349870 (-)
G1376995 NA non-coding upstream 12731 43351286 ~ 43352024 (-)
G1376996 NA non-coding upstream 13702 43352257 ~ 43352486 (-)
G1376992 zbtb48 non-coding upstream 14326 43352881 ~ 43354500 (-)
G1376748 NA other downstream 167120 43159512 ~ 43170042 (-)
LOC110492059 LOC106567118 other downstream 563866 42767849 ~ 42773348 (-)
LOC110492054 LOC106567113 other downstream 767836 42548642 ~ 42569532 (-)
G1377482 NA other upstream 353765 43692320 ~ 43692838 (-)
G1378530 NA other upstream 1214459 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1579458 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1977392 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 2279662 45613938 ~ 45627786 (-)

Expression


Co-expression Network