G1376993 (zbtb48)


Basic Information

Item Value
gene id G1376993
gene name zbtb48
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43348157 ~ 43348953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1573063
GTGGTTCCCTGGGGCAGGAGCTGCGGCCTGGGGCCCTCTCCAAGCAGCCTTCTGGAGATCTTCACCTTACGCCCAGAGCGAGTTGTGGTGGCTGTTGCTTCTGGAGGATCCTTCTTACTTGAGCCGCTACTAGGGGTTTGGGATTTTTTGGGCCTCCCTCTTTTTTGGGGGGGCCTCCCCCTTTTTAGGGGGACCTTGGTTTCTGTAGAAATTACAGGTGGGATTAGGCCATCATCTTCACCCAGAAGATCTGCAGACGGAGGTTCTTCTGGAGAGATGGTCCCTTCTGTGGTGAACTGCTGACAGAGGGCGAGCGCATCTGGTACACATAGGCTGTCTGCAGCCTGTTGCACATTGTCCAGATTCAGAGAGTCAAGCTTCAAATTCCCTGTGTAGAAAAAGTCTAGAAGTAGTTCCAGGCCGTCAGTGGGGCACTCCTTTGGGAGGGAGACCTTCTTAACCATGGTAGTGGTTGGCTCAGATTCCTGGAAAATCTTACTAAAACAGGCCAGGATGTTGCGATGGGCATTGTAcgccctcccatctcctcctacAGTCAGTTTGGCATCACAGAACCAGCCAAGACCCCTCTGCTCATTCAGAAAAGACAACACCCGTTGGGCATGGGTGCTGCTCACCTGTGTAAGCATCTCTCACCCTTGACAGTAGATTGCTGCTTCTCAAGGTACACTGGATT
>TU1573064
CTCTGTTGTATCTGTAGGCTGAGGGAGGCTTTGTCCCTCGTCCTCAGCCCCATCACTTCTATCCATTAGGCTGATAACTAGTTGTGGTGTTCCCCTGCTGGTGGTTCCCTGGGGCAGGAGCTGCGGCCTGGGGCCCTCTCCAAGCAGCCTTCTGGAGATCTTCACCTTACGCCCAGAGCGAGTTGTGGTGGCTGTTGCTTCTGGAGGATCCTTCTTACTTGAGCCGCTACTAGGGGTTTGGGATTTTTTGGGCCTCCCTCTTTTTTGGGGGGGCCTCCCCCTTTTTAGGGGGACCTTGGTTTCTGTAGAAATTACAGGTGGGATTAGGCCATCATCTTCACCCAGAAGATCTGCAGACGGAGGTTCTTCTGGAGAGATGGTCCCTTCTGTGGTGAACTGCTGACAGAGGGCGAGCGCATCTGGTACACATAGGCTGTCTGCAGCCTGTTGCACATTGTCCAGATTCAGAGAGTCAAGCTTCAAATTCCCTGTGTAGAAAAAGTCTAGAAGTAGTTCCAGGCCGTCAGTGGGGCACTCCTTTGGGAGGGAGACCTTCTTAACCATGGTAGTGGTTGGCTCAGATTCCTGGAAAATCTTACTAAAACAGGCCAGGATGTTGCGATGGGCATTGTAcgccctcccatctcctcctacAGTCAGTTTGGCATCACAGAACCAGCCAAGACCCCTCTGCTCATTCAGAAAAGACAACACCCGTTGGGCATGGGTGCTGCTCACCTGTGTAAGCATCTCTCACCCTTGACAGTAGATTGCTGCTTCTCAAGGTACACTGGATT

Function

symbol description
zbtb48 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1573063 False 697 lncRNA 0.53 1 43348157 43348853
TU1573064 True 797 lncRNA 0.53 1 43348157 43348953

Neighbor

gene id symbol gene type direction distance location
nol9 nol9 coding downstream 409 43340635 ~ 43347748 (-)
LOC110492064 LOC106567125 coding downstream 21657 43253172 ~ 43326500 (-)
LOC110492063 LOC106567124 coding downstream 104452 43217803 ~ 43243705 (-)
LOC110492905 LOC106567327 coding downstream 135672 43210914 ~ 43212485 (-)
LOC110491060 LOC106567122 coding downstream 223538 43117471 ~ 43124619 (-)
LOC110492067 klhl21 coding upstream 7542 43356495 ~ 43375265 (-)
LOC110492068 LOC106567131 coding upstream 148229 43497182 ~ 43503930 (-)
LOC110492069 LOC106567132 coding upstream 185741 43534694 ~ 43564442 (-)
LOC110492071 LOC106567135 coding upstream 229583 43578536 ~ 43599139 (-)
LOC110492072 cenb5 coding upstream 254140 43603093 ~ 43712334 (-)
G1376991 NA non-coding downstream 9602 43337162 ~ 43338555 (-)
G1376901 NA non-coding downstream 57403 43221431 ~ 43290754 (-)
G1376878 NA non-coding downstream 155877 43191956 ~ 43192280 (-)
G1376873 NA non-coding downstream 163749 43184109 ~ 43184408 (-)
G1376994 zbtb48 non-coding upstream 617 43349570 ~ 43349870 (-)
G1376995 NA non-coding upstream 2333 43351286 ~ 43352024 (-)
G1376996 NA non-coding upstream 3304 43352257 ~ 43352486 (-)
G1376992 zbtb48 non-coding upstream 3928 43352881 ~ 43354500 (-)
G1377011 LOC100136012 non-coding upstream 40454 43389407 ~ 43389711 (-)
G1376748 NA other downstream 178115 43159512 ~ 43170042 (-)
LOC110492059 LOC106567118 other downstream 574861 42767849 ~ 42773348 (-)
G1377482 NA other upstream 343367 43692320 ~ 43692838 (-)
G1378530 NA other upstream 1204061 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1569060 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1966994 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 2269264 45613938 ~ 45627786 (-)

Expression


Co-expression Network