Gene
RNA
| Item | Value |
|---|---|
| gene id | G1376994 |
| gene name | zbtb48 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048580.1 |
| NCBI id | CM023234.2 |
| chromosome length | 78541548 |
| location | 43349570 ~ 43349870 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| zbtb48 | Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48). |
| description |
|---|
| zinc finger and BTB domain-containing protein 48-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1573067 | True | 301 | lncRNA | 0.50 | 1 | 43349570 | 43349870 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nol9 | nol9 | coding | downstream | 1822 | 43340635 ~ 43347748 (-) |
| LOC110492064 | LOC106567125 | coding | downstream | 23070 | 43253172 ~ 43326500 (-) |
| LOC110492063 | LOC106567124 | coding | downstream | 105865 | 43217803 ~ 43243705 (-) |
| LOC110492905 | LOC106567327 | coding | downstream | 137085 | 43210914 ~ 43212485 (-) |
| LOC110491060 | LOC106567122 | coding | downstream | 224951 | 43117471 ~ 43124619 (-) |
| LOC110492067 | klhl21 | coding | upstream | 6625 | 43356495 ~ 43375265 (-) |
| LOC110492068 | LOC106567131 | coding | upstream | 147312 | 43497182 ~ 43503930 (-) |
| LOC110492069 | LOC106567132 | coding | upstream | 184824 | 43534694 ~ 43564442 (-) |
| LOC110492071 | LOC106567135 | coding | upstream | 228666 | 43578536 ~ 43599139 (-) |
| LOC110492072 | cenb5 | coding | upstream | 253223 | 43603093 ~ 43712334 (-) |
| G1376993 | zbtb48 | non-coding | downstream | 617 | 43348157 ~ 43348953 (-) |
| G1376991 | NA | non-coding | downstream | 11015 | 43337162 ~ 43338555 (-) |
| G1376901 | NA | non-coding | downstream | 58816 | 43221431 ~ 43290754 (-) |
| G1376878 | NA | non-coding | downstream | 157290 | 43191956 ~ 43192280 (-) |
| G1376995 | NA | non-coding | upstream | 1416 | 43351286 ~ 43352024 (-) |
| G1376996 | NA | non-coding | upstream | 2387 | 43352257 ~ 43352486 (-) |
| G1376992 | zbtb48 | non-coding | upstream | 3011 | 43352881 ~ 43354500 (-) |
| G1377011 | LOC100136012 | non-coding | upstream | 39537 | 43389407 ~ 43389711 (-) |
| G1377018 | NA | non-coding | upstream | 44612 | 43394482 ~ 43394875 (-) |
| G1376748 | NA | other | downstream | 179528 | 43159512 ~ 43170042 (-) |
| LOC110492059 | LOC106567118 | other | downstream | 576274 | 42767849 ~ 42773348 (-) |
| G1377482 | NA | other | upstream | 342450 | 43692320 ~ 43692838 (-) |
| G1378530 | NA | other | upstream | 1203144 | 44553014 ~ 44553547 (-) |
| plxna2 | LOC106567158 | other | upstream | 1568143 | 44621739 ~ 44964691 (-) |
| slc48a1a | LOC106567162 | other | upstream | 1966077 | 45315947 ~ 45320378 (-) |
| LOC110492109 | LOC106567177 | other | upstream | 2268347 | 45613938 ~ 45627786 (-) |
