G1376992 (zbtb48)


Basic Information

Item Value
gene id G1376992
gene name zbtb48
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43352881 ~ 43354500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1573062
ACCAAACAACACATTCTGATTGCCAGCATTAAAGATGTATTACTTTCTATGTTCATAACGCTAATAACTTGCAAATGTGCAGGGCCCTAGCATTTTGGGGGCCCCCAAGAAATATTTTTACCCATCTCaaaggcaaaacattttagtggcccccctCTTTGTGGGCAGAGAGAAAAACGTGCTACTTTAAAGTTAATGTCCTGCAATTCGACACATTTTCCTTGGGGCgtggagaaaatgttgcagttttaaatcagacttcctgcaattctacacatttttccatggggcagaaagaacagtttgcagttttAAAACGAATTGAATGCAAAACTAATTgaatgcaattctactcattttgctaTGGGAAGGAGAGAAAATGTAGCAATTTTTATGTGAATTTCTTGCATGTTCTTATGATATCTGTGTGacagtgactaacaaaatcaatggggggccCCTTGGAGGTCAGGGCACGTGCCTTGGGTGTCCGGTCAGTAACTCGGCCATGATTACAACAagatttagatagctggctagactaacttacctagCAATCTATAAAATGTTAGCTTACATGGGCTAATTgattgactgtcagtgactgacataacaagaggaaaactaTTGAAATTGCACATTTTGTAATCCACTATGCTATCTCTAAACAGTaggttgagaccccgactgacttcgtaaaaaataaataaataaattccacaaaaaaacaaaacaagccCCAGTCAGCTCTGCTGTAGATAGATTCTCCACTAGGTGCTGCCCCAGCCTGTTGTGTTATTTTTCCTGATAGTGAACAGAACGTTGAAGATCTGAtgttgttttaaaggtacaaattcaacatattttatacaagggtttgtctatgttgaaatttggttactacgatgacataatcctgtggttgaaatgtcaccctcaaaacaacagttaattacttttttcaaatcccaTGCATTTTCCCAagtagattccacgtcacaatacattTCCTATCCCGTCCTCAGGCCTTGCTCTTAGCAGGAGGATCCTCCCGTATGTCCTTCAGATCCACCGTGGTCTCAGGGATGGGGTAGTCTCCTGCCACCAGGAGAGTCTGGTCCATCACATCTGTCACAATGAAACCATGCCCCACCACACCCAAACCCTGGGAGGAGAGCACCTCCACCTGGCCATGTCCCTGTCCCGCCCCAACCTGGGGAAAGCCGACCTGGCCATGAGTAAGGCCCACCTCTACCACACCTTGGCTCTGGGCTAAGCCTACCTCCAACTGGCCAGGCCCATGCCCCACCACAGCCTGGTTAAAGCCCACCACCACCTGCCCTTGGCttgacaccacctcctccaccaggGGCTGGATAACCACCCTGAGGATGTCACTGGCTCCTGGTACAGTTCCAGGTCCAGACACACTGAGTCCAGGTCCAAAGACAGGAAGAGGGACACTGGCTCCAGAGACAGGTGCCAGCCCCTCAGGTGTCCCCTTCTCAGTGGGTGGTGTTGGTGAGGGGCTAGTCTCATCCTCCTCCTGCGACCCCTCATCCTTTACTATCAGGTTCCGTAGCTTCCTCTCCCGCGGGTTGTAGTTCTCGGTGCGGTTGT

Function

symbol description
zbtb48 Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. Orthologous to human ZBTB48 (zinc finger and BTB domain containing 48).

NR:

description
telomere zinc finger-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1573062 True 1620 lncRNA 0.46 1 43352881 43354500

Neighbor

gene id symbol gene type direction distance location
nol9 nol9 coding downstream 5133 43340635 ~ 43347748 (-)
LOC110492064 LOC106567125 coding downstream 26381 43253172 ~ 43326500 (-)
LOC110492063 LOC106567124 coding downstream 109176 43217803 ~ 43243705 (-)
LOC110492905 LOC106567327 coding downstream 140396 43210914 ~ 43212485 (-)
LOC110491060 LOC106567122 coding downstream 228262 43117471 ~ 43124619 (-)
LOC110492067 klhl21 coding upstream 1995 43356495 ~ 43375265 (-)
LOC110492068 LOC106567131 coding upstream 142682 43497182 ~ 43503930 (-)
LOC110492069 LOC106567132 coding upstream 180194 43534694 ~ 43564442 (-)
LOC110492071 LOC106567135 coding upstream 224036 43578536 ~ 43599139 (-)
LOC110492072 cenb5 coding upstream 248593 43603093 ~ 43712334 (-)
G1376996 NA non-coding downstream 395 43352257 ~ 43352486 (-)
G1376995 NA non-coding downstream 857 43351286 ~ 43352024 (-)
G1376994 zbtb48 non-coding downstream 3011 43349570 ~ 43349870 (-)
G1376993 zbtb48 non-coding downstream 3928 43348157 ~ 43348953 (-)
G1376991 NA non-coding downstream 14326 43337162 ~ 43338555 (-)
G1377011 LOC100136012 non-coding upstream 34907 43389407 ~ 43389711 (-)
G1377018 NA non-coding upstream 39982 43394482 ~ 43394875 (-)
G1377026 NA non-coding upstream 45075 43399575 ~ 43400203 (-)
G1377336 NA non-coding upstream 245601 43600101 ~ 43600450 (-)
G1376748 NA other downstream 182839 43159512 ~ 43170042 (-)
LOC110492059 LOC106567118 other downstream 579585 42767849 ~ 42773348 (-)
G1377482 NA other upstream 337820 43692320 ~ 43692838 (-)
G1378530 NA other upstream 1198514 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1563513 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1961447 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 2263717 45613938 ~ 45627786 (-)

Expression


Co-expression Network