G1377545


Basic Information

Item Value
gene id G1377545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43794732 ~ 43795881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1573656
AAACAAACAGTCAACAATCTTTTCAAAACACACAGCAGCAATGGCGAGGTACACTAcatatatataaaagtatgtgaacacctttTGAGtgatgagtggattcggctatttcagcaacacccattgctgacaggtggataaaattgagcacacagccatgcaatctccatagacaaacattgtcagtagaatggcctaagagctcagtgactttcaatgtggcaccttcataggatgccacctttccaacaagtcagttcgtcaaatttctgccctgctagagctgccccagtcaactgtaagtgctgttatggtgaagtggaaaagtctaggagcaacaacggctgagccgcgaagtggtaggccacacaagctcacagaacgggaccgccaagtgctgaagcgcgtaacacATAAATATTGTCTGCAGTGggaacgcgttctctggagtgatgaatcacgcttcaccatctggcagttcgatggacgaatctgggtttggcggatgccaggagaatgctaccatAGTGCAAACTCaattttggtggaggaggaataatggtctggggctgtttttcatggttcgggctaggcccatttagttccagtgaagggaaatcttaatgatacgtcatacaatgacattctagacgattctgtgcttccaattttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgccgtgtacaagaacttgactggcctgcacagagccctgacctcaactccaacGAATACCTTTGAGATTAATTGGAAAGCAGattgcaagccaggcctaattgcccaacatcagtgtccgacctcactaatgctcttgtggctgaatggaagcaagtctctgcagcaatgatctagtggaaagccttcccagaacagtgaaagctgttatagcagcaaaggggggaccgactccatattaatgtccatgattttggaatgaaatgtttgacaaggaggtgtccacatacttttggtcatgtagagtATGTTTGACCTCGAAACATGAAAAATACAACTTCTCACAAGTAAAGCCAGCCACCACAACCACTATAAGCTTATACAGATcacaattacattatgacatttctagagatgcgtcccaaatggcacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1573656 True 1150 lncRNA 0.45 1 43794732 43795881

Neighbor

gene id symbol gene type direction distance location
LOC110492074 LOC106567140 coding downstream 47418 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 61168 43726575 ~ 43733564 (-)
LOC110491064 cpsf3l coding downstream 75751 43713174 ~ 43718981 (-)
LOC110492072 cenb5 coding downstream 82398 43603093 ~ 43712334 (-)
LOC110492071 LOC106567135 coding downstream 195593 43578536 ~ 43599139 (-)
LOC110492076 LOC106567144 coding upstream 26834 43822715 ~ 43828920 (-)
LOC110491066 LOC106567328 coding upstream 150603 43946484 ~ 43953965 (-)
LOC110492081 LOC106567146 coding upstream 195483 43991364 ~ 43997840 (-)
LOC110492085 ptn12 coding upstream 633995 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 665492 44461373 ~ 44465741 (-)
G1377543 NA non-coding downstream 3035 43791492 ~ 43791697 (-)
G1377535 NA non-coding downstream 20545 43773426 ~ 43774187 (-)
G1377516 NA non-coding downstream 54177 43740349 ~ 43740555 (-)
G1377508 NA non-coding downstream 69373 43725155 ~ 43725359 (-)
G1377491 NA non-coding downstream 69734 43704560 ~ 43724998 (-)
G1377554 NA non-coding upstream 14581 43810462 ~ 43810684 (-)
G1377540 NA non-coding upstream 25297 43821178 ~ 43821472 (-)
G1377578 NA non-coding upstream 45915 43841796 ~ 43842112 (-)
G1377601 NA non-coding upstream 60424 43856305 ~ 43856525 (-)
G1377605 NA non-coding upstream 62320 43858201 ~ 43858695 (-)
G1377482 NA other downstream 101894 43692320 ~ 43692838 (-)
G1376991 NA other downstream 456177 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 570349 43217803 ~ 43243705 (-)
G1376748 NA other downstream 624690 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 670566 43117471 ~ 43124619 (-)
G1378530 NA other upstream 757133 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1122132 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1520066 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1822336 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1909229 45705110 ~ 45705453 (-)

Expression


Co-expression Network