G1377605


Basic Information

Item Value
gene id G1377605
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43858201 ~ 43858695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1573721
gAGTTAATACCATATTATAATtgcatttggcagcaattacatctgtgagtctttcttggtaagtctctaagagctttgcacacctggtttATACAATATCTGCCCATTATTCTTCAAAAaagtcttcaagctctgtcaagttggttgttgatcattgctagacaggcaTTTTCAAGTCATGCCATATATTtttaagccaatttaagtcaaagctataactaggccactcaggaacattcactgttgcCTTGTTAaaaaactccagtgtatatttggccttgtgttttaggtaattgtcctgatgaaaggtgaatttgtctcccagtgtctgttggaaagcagactgaaccaagttttcctctaggagttATACTATGCTTAGTTCTACTAAggtaacatatggaattgttttaagatggtcatactaagGACCATTTAgcaatttgatttggaattttaggacccattaagtataacaaaaatatatacacattt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1573721 True 495 lncRNA 0.35 1 43858201 43858695

Neighbor

gene id symbol gene type direction distance location
LOC110492076 LOC106567144 coding downstream 29281 43822715 ~ 43828920 (-)
LOC110492074 LOC106567140 coding downstream 110887 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 124637 43726575 ~ 43733564 (-)
LOC110491064 cpsf3l coding downstream 139220 43713174 ~ 43718981 (-)
LOC110492072 cenb5 coding downstream 145867 43603093 ~ 43712334 (-)
LOC110491066 LOC106567328 coding upstream 87789 43946484 ~ 43953965 (-)
LOC110492081 LOC106567146 coding upstream 132669 43991364 ~ 43997840 (-)
LOC110492085 ptn12 coding upstream 571181 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 602678 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 630567 44489262 ~ 44495268 (-)
G1377601 NA non-coding downstream 1676 43856305 ~ 43856525 (-)
G1377578 NA non-coding downstream 16089 43841796 ~ 43842112 (-)
G1377540 NA non-coding downstream 36729 43821178 ~ 43821472 (-)
G1377554 NA non-coding downstream 47517 43810462 ~ 43810684 (-)
G1377545 NA non-coding downstream 62320 43794732 ~ 43795881 (-)
G1378199 NA non-coding upstream 80607 43939302 ~ 43982744 (-)
G1378220 NA non-coding upstream 124245 43982940 ~ 43985022 (-)
G1378221 NA non-coding upstream 126416 43985111 ~ 43985349 (-)
G1378222 NA non-coding upstream 127091 43985786 ~ 43986380 (-)
G1378317 pss non-coding upstream 330861 44189556 ~ 44190280 (-)
G1377482 NA other downstream 165363 43692320 ~ 43692838 (-)
G1376991 NA other downstream 519646 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 633818 43217803 ~ 43243705 (-)
G1376748 NA other downstream 688159 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 734035 43117471 ~ 43124619 (-)
G1378530 NA other upstream 694319 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 1059318 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1457252 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1759522 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1846415 45705110 ~ 45705453 (-)

Expression


Co-expression Network