G1378220


Basic Information

Item Value
gene id G1378220
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 43982940 ~ 43985022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1574416
cagcagcatctggtctcccatccagggactgaccaggaccaaccctgcttatcttcagaagcaagccagcaatggtatgcagggtggtatgctgctggctgcaTCACATataaatgattggagacaggTGCAGGGATATGTAATAGGGGGTTTTAATACTCCACCCAAAAATACAACATGCCATGAAAGACAcggggacgaagcccaaaacaaacacgtatacaaaaacacagggttgtaacccaaacaaaagagtgagcttaaacctcaaatacatggGATGAGACCCATAACAGTAACTGCACAACAATACACTCAGCACGAAAACCAAATCCACAAAGCACACCAacagacatgggaacaataaccgacaaaacaatggtgaacagagggcacatatatacaattactaatcagggggaatgggaaccaggtgtgcataatgaaacAGTGCTGGtgcacggaatgagcagcagtaccgggggaatCCGTGACCTCTTTGCGAGGCGTTGGAAAACCTCACttttctttgtggttgaatctgtttgaaattcactgctcgactgagggaccatacagataattgtatgtgtgtggtatgaggtagttattcaaaaatcattttaaacactattattgcacacagagtgagtccatgcaaccttttatgtgacttgttcagtacatttttactcctgaacttgtttaggcttcccataacaaaggggttgaatacttattgactcaagacatctcAGCTAtgaattttttatgaatttgtaaaaacagaattccactatgacattatggggcattgtgtggaGGGcaatgattattttttttaaatctaaatgtaatccattttaaagtcaggctgtaacacaggaaaatgtggaagaggtcaaggggtgaatactttctgaaggacctGTATTTTTAACTATTGTTAATGTTTGTGTCGCCCTAGGTGAGGAAGACCACTACACACAATGAAGTGTGTACCTGTCCTCGGCTCCACTCGTAGGCTTCAGGTGAGTAGCGTGTTCCACACAGCTCTATCTGGACAACCCTCTTGAAGTCCAGCAGGCCCTTCTACTCACAACGTCTGAAGGGGGCCCCGGGCCAATCTTTGTCACCCACATGGATGAGACCCACAGGGCCGTGTCTGACAAACACAGGACACAAATGTACTGTTTCACAGAAATAGATTCAGCCTAGTCCTGCATAAGAAAAAAAATGTGCTCATCagagattctccattgaaagtgctttttattccaggactaggcttaatctttgTCCGGGAAACCGGCCCTGAAAGTATTCTAGTTGTTCTGGCATATGAAAAATGAAGCTTACGAGTACAATACTTATTTCTCAGCAAATGCTTGGAGAATACGGTATGCTACGGTGTGATCACcacctgtttaaaaaaaaaggtggCCTATACAGTTAAACATTACAACAAATGTATCTTGAGTGCTTCGTGTCAAAACATTATAACAGTAACCTTTGTCCTGCATCTGTCAGGAAGGTTCATTCGACATTAGCCTAAATGTGTGACGAGGAGAAAGACGAAGCAGGTGTTGTCTTGAGGCACATCTGAAAGGTAAACTGAACACTGCCGAACTGCAGTTAGTAGGCCTTTGCTATTAATGTCCAAAATCACTTTCCTCACATCTCAGATTGCATAGTGTAGAAAAGGGGGCTCCTCATCACCAATAGTAAGGTGGATAAAGCCCGTGGCCAGGATTGTACGGTAGGCCTCATACACGTTGACGTCCCCAACATCAGCCACCATCAGAGACTCATAGGGCACTGCCCGGGTGTCACTTTTGTAGGCCCTCAACATGGCAGACCCTGCTCTGACGATGGCTAAATCTGTAAAGGACCATGCATTGTCTTACCTTTGTGTAACAAGCACAATTTGTTAGACAcaagtgagaaagttacagatgcacaaatatcataccccccccacaaaaaaatgcTAACATCCCCTGTTATTGCAattgtgagaggttagcatgtcttgggggtatgatatacagtgccttgcgaaagtattcggcccccttgaact

Function

NR:

description
PREDICTED: agmatinase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1574416 True 2083 lncRNA 0.43 1 43982940 43985022

Neighbor

gene id symbol gene type direction distance location
LOC110491066 LOC106567328 coding downstream 28975 43946484 ~ 43953965 (-)
LOC110492076 LOC106567144 coding downstream 154020 43822715 ~ 43828920 (-)
LOC110492074 LOC106567140 coding downstream 235626 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 249376 43726575 ~ 43733564 (-)
LOC110491064 cpsf3l coding downstream 263959 43713174 ~ 43718981 (-)
LOC110492081 LOC106567146 coding upstream 6342 43991364 ~ 43997840 (-)
LOC110492085 ptn12 coding upstream 444854 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 476351 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 504240 44489262 ~ 44495268 (-)
LOC110492088 NA coding upstream 553329 44538351 ~ 44540757 (-)
G1378199 NA non-coding downstream 196 43939302 ~ 43982744 (-)
G1377605 NA non-coding downstream 124245 43858201 ~ 43858695 (-)
G1377601 NA non-coding downstream 126415 43856305 ~ 43856525 (-)
G1377578 NA non-coding downstream 140828 43841796 ~ 43842112 (-)
G1377540 NA non-coding downstream 161468 43821178 ~ 43821472 (-)
G1378221 NA non-coding upstream 89 43985111 ~ 43985349 (-)
G1378222 NA non-coding upstream 764 43985786 ~ 43986380 (-)
G1378317 pss non-coding upstream 204534 44189556 ~ 44190280 (-)
G1378346 NA non-coding upstream 219499 44204521 ~ 44204774 (-)
G1378353 NA non-coding upstream 233566 44218588 ~ 44218850 (-)
G1377482 NA other downstream 290102 43692320 ~ 43692838 (-)
G1376991 NA other downstream 644385 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 758557 43217803 ~ 43243705 (-)
G1376748 NA other downstream 812898 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 858774 43117471 ~ 43124619 (-)
G1378530 NA other upstream 567992 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 932991 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1330925 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1633195 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1720088 45705110 ~ 45705453 (-)

Expression


Co-expression Network