G1378317 (pss)


Basic Information

Item Value
gene id G1378317
gene name pss
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44189556 ~ 44190280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1574518
aatcagatgtgtagtgctagggcaaacacTAAATAGTGCACTCCTTTGTCCCCTGGACCAAGAAACACAGCATCTGGTGTATTACCTCCAGCGTAGACCACCTTCTTCCAGGCCTGTGACTCCAGGACCCTGTCGTGAGGGTAGAAGCCCTGGTTGACCATGAAGAGGATCATGGCCACAGCAGTGACCCGCAGGATCACCATGTTACCTCCGGTCAACAGGGAGAGACAGGCCAGGATGGCGGAAGAGTAGATACATGGCAGGCCACGGTACATGAAGGGGATGCCGCTGGAGAAGAAGCAGAGGCGGACAAACACAGACAGGACGTAGCACATGCACAGGATGTTGTCCATTAAGGCATGTGTCCTCAGGAGCAATGATGTTGCAATCCCAAAGGTTGTGAAATCTGCAAAATCATCCAGTTTAGCACCTGAACCAGAGAGAACGACAGGAAGTGACCAGTTATACATTTGTCTCATGACTTGTCTCACACGGCAGATTAATGTCCACATGCTACTGCTGTGAGGTTAGTTCACTGCTAACATAAGACAAAACA

Function

symbol description
pss Enables phosphotransferase activity, for other substituted phosphate groups. Involved in phosphatidylserine biosynthetic process. Located in endomembrane system. Is expressed in adult brain cell body rind; adult fat body; adult gnathal ganglion; and adult head.

NR:

description
uncharacterized protein LOC109868936 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1574518 True 556 lncRNA 0.50 2 44189556 44190280

Neighbor

gene id symbol gene type direction distance location
LOC110492081 LOC106567146 coding downstream 191716 43991364 ~ 43997840 (-)
LOC110491066 LOC106567328 coding downstream 235591 43946484 ~ 43953965 (-)
LOC110492076 LOC106567144 coding downstream 360636 43822715 ~ 43828920 (-)
LOC110492074 LOC106567140 coding downstream 442242 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 455992 43726575 ~ 43733564 (-)
LOC110492085 ptn12 coding upstream 239596 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 271093 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 298982 44489262 ~ 44495268 (-)
LOC110492088 NA coding upstream 348071 44538351 ~ 44540757 (-)
cd34a cd34a coding upstream 369921 44560201 ~ 44596213 (-)
G1378222 NA non-coding downstream 203176 43985786 ~ 43986380 (-)
G1378221 NA non-coding downstream 204207 43985111 ~ 43985349 (-)
G1378220 NA non-coding downstream 204534 43982940 ~ 43985022 (-)
G1378199 NA non-coding downstream 206812 43939302 ~ 43982744 (-)
G1377605 NA non-coding downstream 330861 43858201 ~ 43858695 (-)
G1378346 NA non-coding upstream 14241 44204521 ~ 44204774 (-)
G1378353 NA non-coding upstream 28308 44218588 ~ 44218850 (-)
G1378355 magi3 non-coding upstream 32478 44222758 ~ 44224006 (-)
G1378356 NA non-coding upstream 34156 44224436 ~ 44224669 (-)
G1378361 NA non-coding upstream 41545 44231825 ~ 44232053 (-)
G1377482 NA other downstream 496718 43692320 ~ 43692838 (-)
G1376991 NA other downstream 851001 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 965173 43217803 ~ 43243705 (-)
G1376748 NA other downstream 1019514 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 1065390 43117471 ~ 43124619 (-)
G1378530 NA other upstream 362734 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 727733 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1125667 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1427937 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1514830 45705110 ~ 45705453 (-)

Expression


Co-expression Network