G1378355 (magi3)


Basic Information

Item Value
gene id G1378355
gene name magi3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44222758 ~ 44224006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1574557
GTTTGACGGTCTTGATACGGATGGGCTCCCGAAAGTGGCGGATGACAGCGAGGGTGTCTCGGTTGGTCAGGCCGCTGACAGGGGTGCCGTTCACTTCCAGAAGCACGTCCCCGATGTTCGGTAACCTCCCGACGTGACAGACCATTGCCTCAGTAATCACATGTCCCAGGTATGGGAATTCTCCCAGCTCTGCTCCCCCTTGTACGTCCACAACCGAGCCGAACTCCTCGGCATTCCCCCATGATAGCGCGCACTCCTGGACTTTACCGGACCAGTGCTTCTTCTTCTTAAGCGTTTTGGACATATTTAATCCCTCTTGTAAATCTTTAGAGTCCCAGACTGTGTGGTTGTTTGAGAGACGAGATAAGCAGTTATTTTTAAGATGCAGATGTGACTATTGCACAGAGATAATGAGATGAGGCAATCTGCTCACTAGTGTTTTtgtattccattccattcattgAGCAAATGTCATTTCAAAGCATTATCCGTATGAACATCCCGAATTATTGGAACATCACCGGTCTGCGATACAATAGTAGACTGTAGTGCAAGACTATCTGCGTCAGTGTTGTCGCAGGAGGCTAGATCGATCGCGGGGATGCTGATGTTGTCCCTCGCACTAAATTCTTGGGTAGCTGGGCAATGAAGCTCTACTTCTGAATGAGTAGCCTACTGCTTACTTACAGTGAATCGGTCTGATAAACAGTTTTATAAAAGCCTATTACGCACAATAGCCAATAACTCAATTTTGGATCTATCCGTCGTTGAGTCTATAGCCTTGACTACACAGACTCTCCACTTGACTCAGTCGATGTATCAATTCCATGAACTAAATTACCCCGAACAACTAGCTATGTCGTTAAATTATTGAGCATAAACAACTGTTGCCTACACCCTCTGACAATTCTTCATCCAAAATTCGCCAGGGGCCAACTTAGTTCCAAGCACTTGTTTTACCTCCTCCACCGGTGACTTTAGCGACGCAGTCCTTGGAAACGGAACAACATACCTGGCATCAGTAGCGAATGTATTCGCAGAACTCGGGTAGTGTAGCCTACTCTGCTGGCAACTTGCTCCCTATTCTTCAACCCTCGTAAGCCCAGCTCAGAGAGCGCCGTCTCGTCAGTTGACGCCCCATGTGGTCTCGTGTCAGATTCAGCCCGGTGGCTCACAGAACTGGGGAGATTTAGGCGCAGGAGTCTATGGAACTAACCATAAAACAAGAAATCACGAATAACTTTTTTGC
>TU1574559
GTTTGACGGTCTTGATACGGATGGGCTCCCGAAAGTGGCGGATGACAGCGAGGGTGTCTCGGTTGGTCAGGCCGCTGACAGGGGTGCCGTTCACTTCCAGAAGCACGTCCCCGATGTTCGGTAACCTCCCGACGTGACAGACCATTGCCTCAGTAATCACATGTCCCAGGTATGGGAATTCTCCCAGCTCTGCTCCCCCTTGTACGTCCACAACCGAGCCGAACTCCTCGGCATTCCCCCATGATAGCGCGCACTCCTGGACTTTACCGGACCAGTGCTTCTTCTTCTTAAGCGTTTTGGACATATTTAATCCCTCTTGTAAATCTTTAGAGTCCCAGACTGTGTGGTTGTTTGAGAGACGAGATAAGCAGTTATTTTTAAGATGCAGATGTGACTATTGCACAGAGATAATGAGATGAGGCAATCTGCTCACTAGTGTTTTtgtattccattccattcattgAGCAAATGTCATTTCAAAGCATTATCCGTATGAACATCCCGAATTATTGGAACATCACCGGTCTGCGATACAATAGTAGACTGTAGTGCAAGACTATCTGCGTCAGTGTTGTCGCAGGAGGCTAGATCGATCGCGGGGATGCTGATGTTGTCCCTCGCACTAAATTCTTGGGTAGCTGGGCAATGAAGCTCTACTTCTGAATGAGTAGCCTACTGCTTACTTACAGTGAATCGGTCTGATAAACAGTTTTATAAAAGCCTATTACGCACAATAGCCAATAACTCAATTTTGGATCTATCCGTCGTTGAGTCTATAGCCTTGACTACACAGACTCTCCACTTGACTCAGTCGATGTATCAATTCCATGAACTAAATTACCCCGAACAACTAGCTATGTCGTTAAATTATTGAGCATAAACAACTGTTGCCTACACCCTCTGACAATTCTTCATCCAAAATTCGCCAGGGGCCAACTTAGTTCCAAGCACTTGTTTTACCTCCTCCACCGGTGACTTTAGCGACGCAGTCCTTGGAAACGGAACAACATACCTGGCATCAGTAGCGAATGTATTCGCAGAACTCGGGTAGTGTAGCCTACTCTGCTGGCAACTTGCTCCCTATTCTTCAACCCTCGTAAGCCCAGCTCAGAGAGCGC
>TU1574558
GTTTGACGGTCTTGATACGGATGGGCTCCCGAAAGTGGCGGATGACAGCGAGGGTGTCTCGGTTGGTCAGGCCGCTGACAGGGGTGCCGTTCACTTCCAGAAGCACGTCCCCGATGTTCGGTAACCTCCCGACGTGACAGACCATTGCCTCAGTAATCACATGTCCCAGGTATGGGAATTCTCCCAGCTCTGCTCCCCCTTGTACGTCCACAACCGAGCCGAACTCCTCGGCATTCCCCCATGATAGCGCGCACTCCTGGACTTTACCGGACCAGTGCTTCTTCTTCTTAAGCGTTTTGGACATATTTAATCCCTCTTGTAAATCTTTAGAGTCCCAGACTGTGTGGTTGTTTGAGAGACGAGATAAGCAGTTATTTTTAAGATGCAGATGTGACTATTGCACAGAGATAATGAGATGAGGCAATCTGCTCACTAGTGTTTTtgtattccattccattcattgAGCAAATGTCATTTCAAAGCATTATCCGTATGAACATCCCGAATTATTGGAACATCACCGGTCTGCGATACAATAGTAGACTGTAGTGCAAGACTATCTGCGTCAGTGTTGTCGCAGGAGGCTAGATCGATCGCGGGGATGCTGATGTTGTCCCTCGCACTAAATTCTTGGGTAGCTGGGCAATGAAGCTCTACTTCTGAATGAGTAGCCTACTGCTTACTTACAGTGAATCGGTCTGATAAACAGTTTTATAAAAGCCTATTACGCACAATAGCCAATAACTCAATTTTGGATCTATCCGTCGTTGAGTCTATAGCCTTGACTACACAGACTCTCCACTTGACTCAGTCGATGTATCAATTCCATGAACTAAATTACCCCGAACAACTAGCTATGTCGTTAAATTATTGAGCATAAACAACTGTTGCCTACACCCTCTGACAATTCTTCATCCAAAATTCGCCAGGGGCCAACTTAGTTCCAAGCACTTGTTTTACCTCCTCCACCGGTGACTTTAGCGACGCAGTCCTTGGAAACGGAACAACATACCTGGCATCAGTAGCGAATGTATTCGCAGAACTCGGG

Function

symbol description
magi3 Predicted to enable frizzled binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within positive regulation of JUN kinase activity. Located in cell junction.

NR:

description
LOW QUALITY PROTEIN: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1574557 False 1249 lncRNA 0.47 1 44222758 44224006
TU1574559 False 1118 lncRNA 0.47 1 44222889 44224006
TU1574558 True 1048 lncRNA 0.47 1 44222959 44224006

Neighbor

gene id symbol gene type direction distance location
LOC110492081 LOC106567146 coding downstream 224918 43991364 ~ 43997840 (-)
LOC110491066 LOC106567328 coding downstream 268793 43946484 ~ 43953965 (-)
LOC110492076 LOC106567144 coding downstream 393838 43822715 ~ 43828920 (-)
LOC110492074 LOC106567140 coding downstream 475444 43742295 ~ 43747314 (-)
LOC118939539 NA coding downstream 489194 43726575 ~ 43733564 (-)
LOC110492085 ptn12 coding upstream 205870 44429876 ~ 44449494 (-)
LOC110492087 NA coding upstream 237367 44461373 ~ 44465741 (-)
LOC118939541 NA coding upstream 265256 44489262 ~ 44495268 (-)
LOC110492088 NA coding upstream 314345 44538351 ~ 44540757 (-)
cd34a cd34a coding upstream 336195 44560201 ~ 44596213 (-)
G1378353 NA non-coding downstream 3908 44218588 ~ 44218850 (-)
G1378346 NA non-coding downstream 17984 44204521 ~ 44204774 (-)
G1378317 pss non-coding downstream 32478 44189556 ~ 44190280 (-)
G1378222 NA non-coding downstream 236378 43985786 ~ 43986380 (-)
G1378221 NA non-coding downstream 237409 43985111 ~ 43985349 (-)
G1378356 NA non-coding upstream 430 44224436 ~ 44224669 (-)
G1378361 NA non-coding upstream 7819 44231825 ~ 44232053 (-)
G1378363 NA non-coding upstream 10150 44234156 ~ 44234383 (-)
G1378365 NA non-coding upstream 13123 44237129 ~ 44237418 (-)
G1378371 NA non-coding upstream 25415 44249421 ~ 44249646 (-)
G1377482 NA other downstream 529920 43692320 ~ 43692838 (-)
G1376991 NA other downstream 884203 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 998375 43217803 ~ 43243705 (-)
G1376748 NA other downstream 1052716 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 1098592 43117471 ~ 43124619 (-)
G1378530 NA other upstream 329008 44553014 ~ 44553547 (-)
plxna2 LOC106567158 other upstream 694007 44621739 ~ 44964691 (-)
slc48a1a LOC106567162 other upstream 1091941 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1394211 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1481104 45705110 ~ 45705453 (-)

Expression


Co-expression Network