XLOC_032832 (psmd12)


Basic Information

Item Value
gene id XLOC_032832
gene name psmd12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21525543 ~ 21534301 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063835
GTTCCACAGCTCTACACTCCTGGCCAGTTGGTGGCGGTAAAGTAGGAGTAGCATGTTTGACAGCCGCCAAATAGAGACAAAGAAGTCTAGCAGCAAATTCTTTTAGGATCGTAGTTGTCACATTCGCTGCGAATTTTTCCTTTTACTAGCTGCAACAATGTCTGATGACAGAGCTGAACGATCAGATGGACGGATAGTGAAGATGGAGGTTGACTACAGTGCCACTGTAGACGAGCGCCTTCCCGAGTGTGAGAAAATGGCCAAGgATGGCAGACTACAGGAGGCAGTCGAGAGTTTGCTGTCACTAGAGAAGCAAACAAGAACTGCTTCGGATATGGTGTCTACCTCCAGGATCTTGGTGGCAATAGTTCAGTTATGCTATGAAGCCAAAGACTGGGATGCTCTGAACGAAAACATCATGCTGCTATCTAAGAGAAGAAGCCAGCTGAAGCAGGCTGTTGCAAAGATGGTACAGGAATGTTACAAGTATGTTGATGCGATGACTGACTTGTCAATCAAACTACGTCTCATCGACACACTTCGCACAGTCACTGCTGGAAAGATATATGTGGAGATTGAACGTGCCAGACTGACTAAAACACTGGCCCATATCAAAGAGCAAAGTGGAGATGTGAAAGAAGCCGCAGCCATTCTGCAGGAGTTGCAGGTGGAGACATACGGATCAATGGAGAAGAAAGAGAAGGCTGAGTTCATTCTGGAGCAGATGAGGCTGTGTATTGCTGTCAAGGACTACATACGCACACAGATCATTAGCAAAAAAATCAACACGAAGTTCTTCCAGGAGGAAGGCACTGAGGAATTGAAATTGAAGTATTATAATCTGATGATTCAAGTTGATCTGCATGAGGGCTCCTACCTGTCCATATGTAAACACTACAGAGCTATATATGACACTCCTTGTATTCTGGAAGACTCGTCCAAATGGCAGCAGGCTCTGAAGAGTGTTGTGCTCTATGTGATTTTGGCGCCGTATGACAATGAACAGTCTGATTTGGTTCATAGAATCAGCACTGACAAGAAACTGGAGGAAATACCCAAATACAGGGATCTCCTTAAACAGTTCACCACCATGGAGCTGATGCGCTGGTCATCTGTAGTGGAGGATTATGGCAAGGAACTGAGGGAGGGTTCCATGGGAACTCCAGACACTGATGTCTTCACCTGCACAGAAGAGGGGGAGAAGAGATGGAAAGATCTGAAAAATAGAGTGGTAGAACATAACATCAGAATAATGGCAAAGTATTACACAAGCATCACCATGGGGAGAATGGCAGCACTGCTCGACCTCTCTGTTGATGAATCAGAGGAGTTCTTATCAAACCTGGTTGTCAACAAGACCATCTATGCGAAAGTGGACCGCCTCGCTGGCATCATAAATTTCCAGCGGCCGAAAGACCCTAACGATCTTCTGAATGACTGGTCTCAAAAATTGAACTCTCTCATGTCTCTGGTCAACAAAACCACTCATCTCATTGCCAAAGAAGAGATGATCCACAACCTCCAGTAGAGCCAGTTCTTGCTACACATTTTGTCCTTTCTTCACCTGATATGTCtgattgaatgaatgttaaataaaCGTTTTCCATCAATGTGTCTGTTTACATTCAGTAATTGACAATGAGGTTACTTGTATTTAGACTGGGAACAATATAAGTCAATGGTTTCCAAAGGTTTTATGATGcatttaaagggatcgttcacccaaaaataaagattctgccactgtttactcaccctctacTTGTTTCAAGctagtttcttttatttattttttgttcttttgaccacaaaagaagaagaaggatgttggaaacctttaaccttctatagtatttgtttttccaatgtagaaagccaatggttacaggtctccaAAATCATTCcaatgatcttcttttgtgttcgatacaatgaagaaaaaaaaacaaaaaaaaaaccctcaaatgCGTAAATAATGATAGAATtgtaattttttggtgaactatccttttaattttTCTGCTATGTTTTGTTTGTGATCTCTGGCTGTAAATGCCCAGGGAAAAATGACTAAGCTCCATATGAAGCCTCGAAACTCAGATACACACCATCCCGCTATTTGTATTAAGTACATTTCTTGTGTTAATAAATTGCATAGTAAGATTCATATTAAACGTTTTTGGAGAAATAAATCTGGCTTTGTTAATTTACTATTTAGGAGAAATACAGTAGGTTAAAACAAAGATAACAGCAAGACATTAGTGCATCTCTGAGGAACTCAAAGTTGAATAATTCAGTTTTTGAACTGATCAATTAAGTCATTGGTTCATGTGTAAATTTATTTCATTCTTCATTTATGTACAGTGATTTTGCTACATAAACACATTCATAATACCTCTGGTCATTAAGCAGT
>TCONS_00064735
AATAGAGACAAAGAAGTCTAGCAGCAAATTCTTTTAGGATCGTAGTTGTCACATTCGCTGCGAATTTTTCCTTTTACTAGCTGCAACAATGTCTGATGACAGAGCTGAACGATCAGATGGACGGATAGTGAAGATGGAGGTTGACTACAGTGCCACTGTAGACGAGCGCCTTCCCGAGTGTGAGAAAATGGCCAAGgATGGCAGACTACAGGAGGCAGTCGAGAGTTTGCTGTCACTAGAGAAGCAAACAAGAACTGCTTCGGATATGGTGTCTACCTCCAGGATCTTGGTGGCAATAGTTCAGTTATGCTATGAAGCCAAAGACTGGGATGCTCTGAACGAAAACATCATGCTGCTATCTAAGAGAAGAAGCCAGCTGAAGCAGGCTGTTGCAAAGATGGTACAGGAATGTTACAAGTATGTTGATGCGATGACTGACTTGTCAATCAAACTACGTCTCATCGACACACTTCGCACAGTCACTGCTGGAAAGGTCTCTACTCATGCTTTTAGATACATGTTCTCTGTTATAGTGATGTGCTTTACACTTTCatcatactatatatatatatcaatgttcTGCAGATATAT

Function

symbol description
psmd12 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

GO:

id name namespace
GO:0001822 kidney development biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0007420 brain development biological_process
GO:0031595 nuclear proteasome complex cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-617 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

Ensembl:

ensembl_id ENSDARG00000052377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063835 False 2413 mRNA 0.40 11 21525543 21534301
TCONS_00064735 True 591 lncRNA 0.43 4 21532305 21534232

Neighbor

gene id symbol gene type direction distance location
XLOC_032831 cacng4a coding downstream 3788 21513363 ~ 21521755 (-)
XLOC_032830 NA coding downstream 16504 21504503 ~ 21509039 (-)
XLOC_032829 NA coding downstream 27508 21496479 ~ 21498035 (-)
XLOC_032828 cacng1a coding downstream 32791 21470261 ~ 21492752 (-)
XLOC_032827 obsl1a coding downstream 336248 21157195 ~ 21189295 (-)
XLOC_032833 si:dkey-43k4.3 coding upstream 41863 21576164 ~ 21582638 (-)
XLOC_032834 ppp1r12c coding upstream 53904 21588205 ~ 21616659 (-)
XLOC_032835 si:dkey-43k4.5 coding upstream 98985 21633286 ~ 21678263 (-)
XLOC_032836 mtmr14 coding upstream 162827 21697128 ~ 21726758 (-)
XLOC_032837 setd5 coding upstream 275332 21809633 ~ 21830477 (-)
XLOC_032825 NA non-coding downstream 494835 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 512496 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 878210 20647227 ~ 20647333 (-)
XLOC_032842 NA non-coding upstream 646961 22181262 ~ 22181876 (-)
XLOC_032844 BX537277.1 non-coding upstream 1006681 22540982 ~ 22541076 (-)
XLOC_032846 NA non-coding upstream 1483752 23018053 ~ 23018480 (-)
XLOC_032848 NA non-coding upstream 1676250 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1860542 23394843 ~ 23394899 (-)

Expression


Co-expression Network