XLOC_032833 (si:dkey-43k4.3)


Basic Information

Item Value
gene id XLOC_032833
gene name si:dkey-43k4.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21576164 ~ 21582638 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063836
GCTGGTGAACAGGATCTCGTGAGgaATGATGGCCAGCGGATCAAAATATAAAGAGTCTGGGATCCCACAGTATAGAACAGACACACgacaattaataaaatTAATGATGCAAGAATCTCGTCTAACGGATTTTCAACAGAGACAGATCAATAATAAGCTAAAAAATGGAGGGGCTCTTCCAATAACCTTTTATTCCAGTCCACTTGAGCCAAATACTCCTTCAGAGACCAGAGTTACAAGAGTGGGGACACTGGTAGGACAGCAGCAGAAGCGCAGTGCAGAAAGATGTCGTGCTGGAGATAATTACAAACGAGAGCAATTTCTGCCTAGTGCAGCACGGGATCTAGAGAAGGAAAAGAGAAAGCTACAAAATCTTCTTTCTACTGGTCAAAAGGATGCTGGGCCAACTCACTCCCAAAGAGAATCCACTGAGAGAAGAGAGCAACCGGTAGACAGGTTCCAGGAAGTTCTGGATGAGATTGAGGACAGGAGGCAATTTTTAGAGGAGATGATGTCATTGGGAAAAGGTCACCAGTACCAGCAGCTCATCAACACAGAAATTTCCCAGAAAATCTGTGAGCTTGAAGAGATCGACAAGAAACGCAGTGAAGAACTAAGGACCCCACAGCTAACTGGAAAAGAGGAACAATGAAGTAAAGAGACGTATGGAGAATTTAGAGAAAATATAAGTTAGTGCTATAATGTCAGTTAGTATGAGCATTAAAAAATCCTGAAACTCTggtttttaagtatttaaattgttttatttttgatgtccTCCATTCTATAAGCACAGACTATTAAAAGCACAATACTGAAAACtgataaatacaattaaacaccCAAATAGCTGCAGATGACAAactaaaatgtaagcaaaatattTATAGACACTTAATAGTCACTGAGGACATGTGCATAAATTAAACACACTAAAGGCACTGCTTCAGAAATACAATCCTGATAGAGTTAACAGAGATTAAGGCTCAACACACAACATCTAACATTCTACAGtaaaaaataaaccatttaaacaTTACTGAAATGTAATATTGCATAATGTCTTGCTCGAGTGAGGACTATT
>TCONS_00064736
aaaaaacatggagagaacatttGACGTTAAccttataaaacaaatgaatcatGTCGAAGATTATTTAGATCAGACTTCTCGAAAGCAACTCTAAACTTTCTTAGAACGCAGTTTAATCAGCATTTTTCCTCCTGCTTTGCTGGATTAAATATCCAGTTGTATGTTTTGTGGGTTGTCATAGCAACCGCTCTGCTGCTGGTGAACAGGATCTCgaATGATGGCCAGCGGATCAAAATATAAAGAGTCTGGGATCCCACAGTATAGAACAGACACACgacaattaataaaatTAATGATGCAAGAATCTCGTCTAACGGATTTTCAACAGAGACAGATCAATAATAAGCTAAAAAATGGAGGGGCTCTTCCAATAACCTTTTATTCCAGTCCACTTGAGCCAAATACTCCTTCAGAGACCAGAGTTACAAGAGTGGGGACACTGGTAGGACAGCAGCAGAAGCGCAGTGCAGAAAGATGTCGTGCTGGAGATAATTACAAACGAGAGCAATTTCTGCCTAGTGCAGCACAAAGCTACAAAATCTTCTTTCTACTGGTCAAAAGGATGCTGGGCCAACTCACTCCCAAAGAGAATCCACTGAGAGAAGAGAGCAACCGGTAGACAGGTTCCAGGAAGTTCTGGATGAGATTGAGGACAGGAGGCAATTTTTAGAGGAGATGATGTCATTGGGAAAAGGT

Function

symbol description
si:dkey-43k4.3 Orthologous to human C22orf23 (chromosome 22 open reading frame 23).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-146 Orthologous to human C22orf23 (chromosome 22 open reading frame 23).

Ensembl:

ensembl_id ENSDARG00000052428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063836 False 1084 mRNA 0.39 7 21576164 21582444
TCONS_00064736 True 696 lncRNA 0.42 6 21577860 21582638

Neighbor

gene id symbol gene type direction distance location
XLOC_032832 psmd12 coding downstream 41863 21525543 ~ 21534301 (-)
XLOC_032831 cacng4a coding downstream 54409 21513363 ~ 21521755 (-)
XLOC_032830 NA coding downstream 67125 21504503 ~ 21509039 (-)
XLOC_032829 NA coding downstream 78129 21496479 ~ 21498035 (-)
XLOC_032828 cacng1a coding downstream 83412 21470261 ~ 21492752 (-)
XLOC_032834 ppp1r12c coding upstream 5567 21588205 ~ 21616659 (-)
XLOC_032835 si:dkey-43k4.5 coding upstream 50648 21633286 ~ 21678263 (-)
XLOC_032836 mtmr14 coding upstream 114490 21697128 ~ 21726758 (-)
XLOC_032837 setd5 coding upstream 226995 21809633 ~ 21830477 (-)
XLOC_032838 si:dkey-19e4.5 coding upstream 278449 21861087 ~ 21873266 (-)
XLOC_032825 NA non-coding downstream 545456 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 563117 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 928831 20647227 ~ 20647333 (-)
XLOC_032842 NA non-coding upstream 598624 22181262 ~ 22181876 (-)
XLOC_032844 BX537277.1 non-coding upstream 958344 22540982 ~ 22541076 (-)
XLOC_032846 NA non-coding upstream 1435415 23018053 ~ 23018480 (-)
XLOC_032848 NA non-coding upstream 1627913 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1812205 23394843 ~ 23394899 (-)

Expression


Co-expression Network