XLOC_032834 (ppp1r12c)


Basic Information

Item Value
gene id XLOC_032834
gene name ppp1r12c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21588205 ~ 21616659 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063837
ACGGTGCCCTCTGCAGCCTGGAGGTGGAATTGTAGCTTTGATCTCTGACCTAAAGCCTCAAACGTCATGGCAATTACATAAAATCTCGGTTTGGTTCTTGAATTTACTGGTCGTCGAAATCTCCGATCGCCAGTGCTAGATTATGGGGGACGCGGCGGTAGCGAAGCGGCGGGAGCAGCTGACGCGGTGGTCGGGCTCCAGTACGGACAAAGAGCCGGCGGTGCCGCGGAGTCGCTGGAGAGGAGAGACGAGCACCAGAGCTCCTGATGGAGGCAGACCAGACACCAATGAGCGgcagaaaaaaaacagGTGGCGGGTAACATTTGAGAAAACTGCAGAGTTCCTAGCAGTGTGTGCTAGTGGCGACACGGAGGAGGCCAAAGCGATGCTGAGAGAAGTATTATTAAATGGAGAGGATGATGTGGTGAACTGTGCCAATGCAGATGGAATAACAGCTTTACACCAGGCCTGTATTGATGGCAGTATGGAGATGGTAGATTTTCTTCTGTCTCATGGTGCCAATGTCAACCAAGTGGACAGTGAGGGTTGGACTCCCCTTCATGTGGCTGCGTCCTGTGGAAACCTGGAGATAGCAGAATTTCTGCTCCAGCATGGGGCATCACTCTGCTCAGTGAACTGTGATGGTGACGTACCCCTGGACATCGCAAAAGATGAAGACACGCAGATGCTGCTGCAGAAGCACATATTAAAGCAAGGCATGGATTTGGAAGCAGCAAAGCGGGCAGAAGAGGAATGGATCATGCATGATGCTCGGCACTGGCTCACAGATGGACTTCCTGCTAACTTATGCCAACCCCGAACTGGTGCAACTCCCTTACATGTAGCTGCAGCAAAAGGATATTTGGAAGCCATTAAATTGTTGTGTCAGTGTGGTCTGGATGTTAGTGCTAAAGACTGTGATGGCTGGACTCCTCTCCATGCTGCAGCTCATTGGGGTCAAAGTGATGCCTGTCGTTTGCTTGCTGAGCAGCTGTGTGACATGGAGGCCCATAGTAATAGGggtCAGAGTCCATTTGATGTGGCAGATGAGAGTGTTGCGTCTTTACTGGAGGAGCTGTCTAAAAGACAGGCTAAtTGGAGGACTGAACAACAAAATTCACAGACATCAAATGTCAATCCTGCAAACAAAAAACGCAGGAGCTCTGTGTGCCGGATGAGCAGCAAGGATAAAATAAGCGTACAAGACCAGTCTAAAGAACGAGGGGTTTCTGGAGAACTGGAACTCAGTGATGAGAGAGAAAGCAGCCCAgAAAGCTCAACAGTGTCATCTCCAGAGAGCACTGTTCCATCTTCTGGGACAACTGAGGAGAAAGAAGTAAAGGCGAATGATCAAGACAGAGCAAGTCGCACAGCAGTTGTTCCTCCCACCCCTCAGAAGCGAGAATCACCAGCAGAGAGCCCCAGTAACACCTCTGGCGACGGAAGGAAgtaTCAGGCTCCAGTGAGAGATGAGGAGTCTGAGTTTCAGAGGAAAGCACGTTCACGTCTCATGCGGCAGTCACGGCGGTCAACTCAGGGAGTAACACTGACGGATCTTAAGGAAGCAGAACGAAGTATTGTGAAGGACAATGAACCTCAGCATGTCAGTGTTCAGCCTGTGAGCCCCAATGTCACAGTGACACCAGCTGAGAGAGACACTGATCCGGAGAGGGAATCTTTAGAGGCACAAACAAAACTAGGAGTGAGAGATCGCAGAAAAGGGAGGAAAGAGAGACGCTCGACTGGTGTTGTTCAACTTGCTGAAGAGAATGATGATATGGATGCAAATGAAGATGCACAACAAGACAACAATGCAAGggATCACCAGTTAGACGATTCCATACATTCTTCTCTGGATTATAgaaagTTGTATCTGAGGGTGTTGCAAGAGAATGGAAATCTAAAGGAGAAGCTTCAGGAAACTCAGCTTCAGCTAAATGAGAGTAAAGTTCAGTtggagaaactcaaacagaatcaagaGAATGGATCAGACAGACCAGCCCTACTGGAGCTGGAGAGATATGAAAAGAAACTTCTTCAGCGGAGAGCATTTGAGTTAGAAGATGAACTCAAAGTGCTCGTGGATTTGCGTGCTGATAACCAGAGACTGAAGGATGAAAATGCAGCTCTCATTCGTGTCATTAGTAAGCTGTCTAAATGAACCTCTAGGTTCCTCACATTGTTTTCCTGAATTCCATGGGAACGTTCCTGTCCCCCTACCCGCCCAAAGAACCGCACAGCGTTTTGCTCACCCTCTATGATCTCTGGGACGTATGCCTCTGACTGGGGTAGATTAAACTACTGTTCTTCATATGGATATGTACATATTATAAGGCCTTGTTTAGCTTCCAATCTAGACGAAAACTGGAATTTTTAATGACTTTAGAACTATCTGCTGTTCATATGTTTTTAGATTACGGCGTTCAGCTCTTATTCAGGGTGCTCTTgtgtcatttttaatgtttttgactTATTTCGTGCAATGCGCTTGCTGCTTTTTATAGttttaatgtttcttaaaattCTGCAGGCTAGCCATCTCACTAAAGTAGTTCATTATTGTGTCCTTAATACACTGGGCTGCACTGATGACAGTGTTATTGATCATTTGAAGTTTCAGTTCAGGTTTACTGTTCAGTTTCACTTAGAGACAACCGCCATtgcaagagctttgccttttagCAGGTAGAAATCTGCAAAGATAGATGCATCAGAATTGTAAGATACATAGAATTTAGATTAGGATATTGTTCATTAACAACTATATTACAGACCATGGATCTGAAATGTTAGCAGATCAGATTCATGTACATTAAAATTGAATTGGAattttaattcatatattttcatatacatttatatttgaatGTACAAACCTTTCTGATCTGTTAAgcattatttaatatgttaaatGCCTATTGCTGAAATTGCAGTGTTACCGAACTAAGAAATGTTTAAATTGAGCTTTTTAATGCCATGGCGTTGTCAGTTGGgcaatgctattattattttagcttaaaatgcttttaatattTCTTATTACGTTaggtaaataacaaaaacaaaaagaaatgtgcCAAACAGTAACGATATTGCTCAGGGGTCTCTTTTTTTGAGACAGTAGAAGGTTTATAGTAGTGTGTCTTTTTATCGGTATGTATCTGAATTAACACTGTACTTTAGCTGACTACTGTTCTTTGGACCAAACAGGCATTAGAATTGCTCTTTTTCTTTGttgttgcatatttatgaatatattatatatggTGAATTTTGATGCTCTTGTGTTCTGCCAGTGCTgtaatcttttatttttctttcttttttttattattagaaagagACACAAATGTGTTTTGTACTGTGACTGAGTTTTGTCCTAAACCAAACTGGCACCATAGGTCAAAGCTTTGGAAAGTTTAccactgtttatttgttttccccTACAATCTTTGCTTTCAGAATTTAAGCATTTGTTCATGCAAGTGTATTTTGCCAAAAATGTGCCTTTCTATATAAATAGAAGTAATCTCTGTCGCTTT
>TCONS_00064737
AATATTTATGAATCAGGATGAATATTTGGGGTGGAAGTTCCCCTcgcttttatttttctttgtccaGAAACAGTGggATCACCAGTTAGACGATTCCATACATTCTTCTCTGGATTATAgaaagTTGTATCTGAGGGTGTTGCAAGAGAATGGAAATCTAAAGGAGAAGCTTCAGGAAACTCAGCTTCAGCTAAATGAGAGTAAAGTTCAGTtggagaaactcaaacagaatcaagaGAATGGATCAGACAGACCAGCCCTACTGGAGCTGGAGAGATATGAAAAGAAACTTCTTCAGCGGAGAGCATTTGAGTTAGAAGATGAACTCAAAGTGCTCGTGGATTTGCGTGCTGATAACCAGAGACTGAAGGATGAAAATGCAGCTCTCATTCGTGTCATTAGTAAGCTGTCTAAATGAACCTCTAGGTTCCTCACATTGTTTTCCTGAATTCCATGGGAACGTTCCTGTCCCCCTACCCGCCCAAAGAACCGCACAGCGTTTTGCTCACCCTCTATGATCTCTGGGACGTATGCCTCTGACTGGGGTAGATTAAACTACTGTTCTTCATATGGATATGTACATATTATAAGG

Function

symbol description
ppp1r12c Predicted to enable enzyme inhibitor activity and phosphatase regulator activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human PPP1R12C (protein phosphatase 1 regulatory subunit 12C).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0004857 enzyme inhibitor activity molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04921 Oxytocin signaling pathway
ko04270 Vascular smooth muscle contraction
ko05205 Proteoglycans in cancer
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-010724-11 Predicted to enable enzyme inhibitor activity and phosphatase regulator activity. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human PPP1R12C (protein phosphatase 1 regulatory subunit 12C).

Ensembl:

ensembl_id ENSDARG00000052423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063837 False 3542 mRNA 0.43 21 21588205 21616659
TCONS_00064737 True 592 lncRNA 0.42 6 21589412 21597616

Neighbor

gene id symbol gene type direction distance location
XLOC_032833 si:dkey-43k4.3 coding downstream 5567 21576164 ~ 21582638 (-)
XLOC_032832 psmd12 coding downstream 53904 21525543 ~ 21534301 (-)
XLOC_032831 cacng4a coding downstream 66450 21513363 ~ 21521755 (-)
XLOC_032830 NA coding downstream 79166 21504503 ~ 21509039 (-)
XLOC_032829 NA coding downstream 90170 21496479 ~ 21498035 (-)
XLOC_032835 si:dkey-43k4.5 coding upstream 16627 21633286 ~ 21678263 (-)
XLOC_032836 mtmr14 coding upstream 80469 21697128 ~ 21726758 (-)
XLOC_032837 setd5 coding upstream 192974 21809633 ~ 21830477 (-)
XLOC_032838 si:dkey-19e4.5 coding upstream 244428 21861087 ~ 21873266 (-)
XLOC_032839 plxnb1b coding upstream 258273 21874932 ~ 21988375 (-)
XLOC_032825 NA non-coding downstream 557497 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 575158 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 940872 20647227 ~ 20647333 (-)
XLOC_032842 NA non-coding upstream 564603 22181262 ~ 22181876 (-)
XLOC_032844 BX537277.1 non-coding upstream 924323 22540982 ~ 22541076 (-)
XLOC_032846 NA non-coding upstream 1401394 23018053 ~ 23018480 (-)
XLOC_032848 NA non-coding upstream 1593892 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1778184 23394843 ~ 23394899 (-)

Expression


Co-expression Network