G1378454


Basic Information

Item Value
gene id G1378454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 44513553 ~ 44515545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1574661
gggggactagaaagatcaaatccaagtttattggtcgcatacacagtttagcagatgttatcgcaggtacatcgaaatgcttgtgttactggCTCCTAACAGTGCTGTAAAAAATGTCAAGCAAGTACACAAATAAGAACAAATTTGAAACAAGAAATCACAAATGACAGGATGAATCCAGTTAACAACCCAAATAACACTAATCAGTAATCCAAATTCAATCTGTGTATATaaaccaatatatatatacacacacactaagaataTGTAGAGCAGTAGATTTATTACAGTGAACTATGTCAAGAAATCAGTTGATAAATACAGGCGGTGTGCAAAACAGTGTAGCAAAAATGCAACGCACAGTAGTAGATCTATTAGAATGAGCAATGtgaagaatacagtatatgaacaCACAGGGTGAAAACAGTATAAAAGAAATGGTCCAGTGTTTAATGTCTCTATATACATGGGACAGCAgcgttggctgtgtgtgtgtgtatgtatatcagTGGTGGTctgtgccatttaagatgagggaagaattataattgtatttttttatgtgcGAGCATGTcattatttctattacagcatattggatgactaattcatattccattcacctagTTCAATGtgacagcgataggtttaggctacaacATGATTCTCAATTttcccctatacccatcatgaggttgctacaacctagcctatgaatgtaAGTTTACAAAGTAGGCGCACGGGTCAAGAGAAAttagagtaatcaaggtgacagaccttgacacattcaataccgctttgcacactcttgcctgcatctagctgatctaggatgtgatcattagtccaacagttgcaaaataGTTTATAttgaacaaattcaggtatgtttattccCACTTTGTTCAGTTTGCTTCAGTCttagaattttttttaaacagaattgTCGGAATAgacctgatcacacgcaaacagttCATTTTCATAGccgccacatacaaacagcacgAACCcttttattatcatcatcatcatctcgcATCTACGCAcgctcctcctctcaccttcacATGTGGACATCAGCGATCACAACCAGGCAAAGCGTCATATCAtaattgaagtcaatgtacccagaggacagAAAGTAGTTGTCCTCAGGCTACACCATTGTTGTTGCGGCTTCTGTAGACCTTCAGTGCAAaacagtgtgtgtatataaatcATTGCATGACGTGaacatatttagtatagttttatctaaagaGGATAACCTCTAATGTCTCTATTTGAAAAAGAATACATTCACTAAGGATGGTCCTCCTCTGAGGAGGCTCCACtggtatgtatgtgtatatatgtgagtATGGTGACTATGTGTATGGAGGTGTGTGAGCTTTCTTTGTCTCTTACTTACTCCAGGAGTACTACTTACTACTCCAACTACAGGAGATGGTTGTTGGCTGATCGTCTGATAGCCTTAAAGATACAAGCTGTTTTTCAGTACAGAGCCAAGTTTTAGCTTCACTATCcaaataaatacacaggggaatcTTGTTGGACATTTTAATAAATATGATTTCCTTCAAATTCTTTATTTCAAAGGGGGCAAAACTGGCTTTGTGATGCAGGGTTGCCCTAAAGGGGAGAATTGTAACTAAGAATGTTGGCAATGAGAAAGCAGGCTTAGATAAAGAGATATTTGTGAAGTACACTGGAAACAAATAGTTTTTGAATAATCAGGTTAGGTCACTCATTAAGCACAAGCTTCCAAATGAGAGTGAACCAATTCATTCTTCATCATGAGGTTTCTAAACAATCACGTAATAGAACTTCCTTTGAAAGGATATGAAACCGGTGTTTGGGAGGGGCTGCTACATTCATAAGCAGGAGGGTAGTGCATTAAATCACAGCAGCATGTTCACTGTGACTCCCTTCTCAAGGATGCAACAGGAGACTAAAGCAAATCAGAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1574661 True 1973 lncRNA 0.38 2 44513553 44515545

Neighbor

gene id symbol gene type direction distance location
LOC118939541 NA coding downstream 18285 44489262 ~ 44495268 (-)
LOC110492087 NA coding downstream 47812 44461373 ~ 44465741 (-)
LOC110492085 ptn12 coding downstream 64059 44429876 ~ 44449494 (-)
LOC110492081 LOC106567146 coding downstream 515713 43991364 ~ 43997840 (-)
LOC110491066 LOC106567328 coding downstream 559588 43946484 ~ 43953965 (-)
LOC110492088 NA coding upstream 22806 44538351 ~ 44540757 (-)
cd34a cd34a coding upstream 44656 44560201 ~ 44596213 (-)
plxna2 LOC106567158 coding upstream 106194 44621739 ~ 44964691 (-)
LOC110492092 LOC106567333 coding upstream 788175 45303720 ~ 45307537 (-)
LOC110492093 LOC106567160 coding upstream 792801 45308346 ~ 45315784 (-)
G1378468 NA non-coding downstream 45928 44385186 ~ 44467625 (-)
G1378486 NA non-coding downstream 123939 44388829 ~ 44389614 (-)
G1378481 NA non-coding downstream 137044 44376178 ~ 44376509 (-)
G1378476 NA non-coding downstream 141243 44372048 ~ 44372310 (-)
G1378475 NA non-coding downstream 142242 44371083 ~ 44371311 (-)
G1378470 NA non-coding upstream 6041 44521586 ~ 44522883 (-)
G1378469 NA non-coding upstream 18829 44534374 ~ 44535502 (-)
G1378466 NA non-coding upstream 20075 44535620 ~ 44536570 (-)
G1378523 NA non-coding upstream 28858 44544403 ~ 44544729 (-)
G1377482 NA other downstream 820715 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1174998 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 1289170 43217803 ~ 43243705 (-)
G1376748 NA other downstream 1343511 43159512 ~ 43170042 (-)
LOC110491060 LOC106567122 other downstream 1389387 43117471 ~ 43124619 (-)
G1378530 NA other upstream 37469 44553014 ~ 44553547 (-)
slc48a1a LOC106567162 other upstream 800402 45315947 ~ 45320378 (-)
LOC110492109 LOC106567177 other upstream 1102672 45613938 ~ 45627786 (-)
G1380431 NA other upstream 1189565 45705110 ~ 45705453 (-)

Expression


Co-expression Network