XLOC_032835 (si:dkey-43k4.5)


Basic Information

Item Value
gene id XLOC_032835
gene name si:dkey-43k4.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 21633286 ~ 21678263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063838
ACCCGTGACTGAATAAATGCGCATCATTTCACATCCAACCACTAGAAGCGGAGGGAAGTGTGCGTCGGTCGACTGATGTTGAGCAGTTTGTTGAGAAGCAAAAATATAAACTGGCATCGGAACAATTAATAAATCAGGTGGGATTGTTGGAAGAGTGGATAGGTGATGGCATCTCACACAAACGACGAGAACAAACGAAAAATCACTTGAGAATAAAATAAGTGGAGAACAAACGCTGACATCTGTGCGCATGTAGGTAAACcatggtgaaggaaaaaaacgcTTGGTGGATTTTGGATCCTAAAGACCATCTGTTACACATCAATGTGGGTGGCTTGAGAAACACTCTATGCTCAAGCATTCTGAAGAAGTTTCCGGACACACGTCTAGGGCAACTTCTGTCTTGTGACTCTGAGGATGACATTCTACAGCTCTGTGATGACTTTGATGTTCAACGGAAAGAGTTTTACTTTGACCGTAACCCTGGCCTTTTCCCTTATGTCCTGCACTTTTACCAGACTGGTAAGCTGCACATTATGGAAGAGCTATGCATTTTTTCCTTCTCTCAGGAAATTGAATACTGGGGCATAAGTGATTTTTTTCTAGACAGCTGCTGTAGTTACCGTTATCTTGATCGCAAACTGGAGAGACATCACAAAAGCTGGGATGAAGAAAGTGATGTTAGCAGTGTAGATACATCGGTTGATGAAATTTCTGATCTGAACAAAGACATCGAGCACTTCCATGAAATGCGTTTTGGAAACATTCGGAAGTGTCTGTGGCTAACACTGGAAAATCCCGGATATTCAATCCCAAGCAAACTTTTCAGCTTGCTTTCCATTTGTGTGGTGTTGATATCAATTGCTACCATGTGCATTAATAGCATTCCAGAATACCAGAAATTCGATGAAAATGGTAATCTAATTGAAGACCCAACTATGCATGTTTTAGAAGTGTTCTGCATCTGCTGGTTTACCTTTGAAGTAGTAACACGTATGCTTCTTGCTCCAAACCATCGTAAATTCTTCCTGCTACCACTTAATGTGATTGATATAATCTCAGTCATGCCAATTTACATCACAATCTTTTTTGATATGCTCATTGGAAGCGAGTCTGAGCTGGGCAACTTGGGAAAACTGGTCCAGGTGTTGCGGCTAATGAGAATCTTCAGGGTGCTGAAGTTGGCCAGGCATTCAACAGGTTTAAGGTCTCTGGGTGCTACATTACGGCACAGCTACAGAGAGGTTGGGATCTTATTGCTCTACCTGGCAGTGGGTGTATCTGTGTTCTCCGGAATGGCTTACACTGCAGAAAATGAGGAAGATGTTGGTTTGGACACGATCCCAGCTTGCTGGTGGTGGGGGACAGTTAGCATGACAACAGTGGGATATGGAGATGTGGTGCCAGTGACAGTGGCGGGAAAGCTAGCAGCATCTGGCTGCATCCTTGGTGGCACATTAGTTGTGGCGTTGCCCATCACCATCATTTTCAACAAGTTTTCACATTTTTATCGCAAACAGAAAGCTCTTGAGGCCTCAgtgagaaacaacaacaacaagaagttTGTAATGAGACAACAGAGAAATAGTGGAGACAGTGCAATACATGGGCATATCCACTGCTTGGAGGATGAAGAGATGGATGAAGATGTGGATTTTGATACAGGAGTTGTCAACTTTTGCTATGAAGACCATCCATTAACATATACAGTCCGATGTGTCCATTAACCCAAGAAAACCCCAAAAAAAGTGACTAGTACTTTAATATTAACAAAGTCATTATCCTATATTAAACATCATATTCTGACTGAAGATACAGATAGGAAAAAATTAAGGGAATTTCTGGACATTCTGATGCCACTTGTCCCATTTAAAGGAAGAGCAACAGCCAATCAGTTCAACCGATGTTTTTCAAACAGAATGCTGTATTATGAAGAGATTGTGTCCTTCCTAGAGAAGTCCTTATGAATCTTATAGGCTAGAGACATCCTCAGCATTAAACAGCAAGATCCGTAAGTCAGTCGTAAGCACTTAGACTAAAATATCATTCTATTATTTGAATTTCTGTTAATGTTATACAATGGATAAAAACTGTCTGTGGTATTCCATTAGCTTTAGTTTTGGGGACCCACATTGCTGCAAAACTTACAAATTCACCTGCATTCAGACGTGATCGATAATGGTGTACAAAATTGGATTCCTGTCCTTGAAGAAGGCTCGACCCCAGGCTGAAGGGCTGTAGGCAGTTATGGATAATATCTTATGCGGGTACAGCGCAGTGGCTGCTGCTTACAGtatatatgttcttcttaatgttGATAATGTTTGACAGGACTAAATGAGTAGGCTCTGCTCAAATTCAGCTCTCTACTCAGCATAAGATTTACAGACAATTAATTGGGTAACTTATTAAGACTTTCTAAATGGACAAAATGTGGTTCTCCAAAAAGAAGTGTAGACATTTTGCATTTTCTTATTTACTTACAACTAAactttttttggcaaaaaaaacaaaactggaattatactttaaattataaggctctacctacctacctgcatggttttgagatattgagctttacaGTGTTCAAATTCCTTAAAGTAAAACTTATATGAGATAAACAGACAATTATTGACAAATGCCAAATGTACAATACCAGTGACAAtatgctctattttttttttttttttgtagttttgtaaTCAGTATTTTGTGttgaacaagaaaaaagaaaccaTAATGGTTTAAAACCAAATGAAGGAGAATAAATTATGAGGTAACTTTCATTTTTGAACTTTTTAATTTCTTAGCTAATGTctaataatgtattaaaataaaaacattgtcattttattgttaataacaaGTAAAATTCAgttgttttattaacattaacatactgcaataaataaaactgtaatggCTATTTGTCACTGTTGATGGAAATGCAATAATGTTTACTAATCTTTATTGTTGAAATCTATTTTAAACCTTTACATAACTAACATACTGGAGAGGTAATCTCACTATACTAACTACTAACTATAGAAATACTATAAATACTTACACGCATAACCTAAGACCGACTATACAAGTAATTTTACATTAGGCACACAAATACTGTGCAAGATAttgtacaaaaataaagaaaacaagttGTGCAACATGATTTGTGGTACATTCACAAATGAACATTGTTATCCTTTTGAAGTTTTTGAAAGATGGAGTTTAAGTATTGTGGCCAGTACATAAAGAGAGAAGATtctttctacaggtggtttgtcaaacccatttatctgtgtgaagcacacttagAAATCTATAATGTTTTTTATAGAGATACGAAGTGATTATCACTATTTCCTTTTTACAGACTTTTGATTGGCCAACATGGCTTTATGCTTAAGGCTGGTACACACCAAACCGACTTTAAACAACTAGCACTGACAAAACCCAACTGTGTTGTAGCCTTGTGTCGGCTCACATCTGGTTCTGTCTTTCTACAAGTGCAAAGCATGAATTAACATTCAGTACTCTCATCATAGTAATTTCATTCACCATGGAGGGATTTGATtttgcaaatatgtctgataatttggTAATCCATATTGATTGCAAGTATTTGAGAAATGTAACGAAATTATAGTCTGCCTCTTTGTGTTCCTTCTTGTCTTGAATTGTCTACTTGCAACGTCACTTTAATGTTACACTCATGCTCTGATTTGTTGCCGAATAACCAGCTTGCTTTAGCCAATGGCTGACATCAATTCGACATATTGAATCAGGCCGATGAGCTCAGATATTAACCCGACGTGTGGTCTCACCAAACCAACTAGCCTGACCAATGGAATGAAAGCCTAACAGCCAACCATCGGCTCCTGACAATATGTCAAAGAGTGCTTTGTGGTGTCCTTTATACAGCCTTTTGATTGAGAAATATCAAGAGTTGGTCTGTGTAATAAAGTTTATGCTTTGACAGGTTCTCATATCTGCCACTGGAGGGCCATTACCCTGCTAAATTCAGCTCAAATCTTGATCATGCTCTTatccactatgtacttatgcacttacacagtCAACAGCATAGTTTATGAATATAGTGTTGtgccaaatggaacactaatgttttttttactaagtgaaaattcaaaccgttttccaGATGACGTTGGTCGGTtgccaaattaataaaataaatgtccaaactaccaaataatacctgccaagACTATAGCTGCATTTACcattgggaggcgctataatcactcgtgttttttgctttcacaatccaaaataaataaagtaattctACATCAGTGCCCTTCTGCTACATGAGCAAAACagtggccgttgagtgtgtgaagtatcactccacacttcattttagcggttGATCATCctggtatttaaagtgcacttattctttttagagttttcagtgttaacgcactatttatactacaaaaggGTGTAGAATAGCgaataagtatgtgatttggtaTGCACTTCATGGTTATTGCAGCTTGCTCACGTGtatttgattagggctggagttTAATTTTAAGCAGCACTGGCCCTCCATAGGTTGATTTGAAGAACACTGgcttatagacccttttcacatttctccACAGTGGAAGTTGTGCAGCAAATGGGAGAGTACTACAATTTTTGCTTTGTATTCCTTtgtgctcaaataataaaagaaaaacgttgttaaagtaatgttttcacagcttacaaaaaaaagaaaaacattgtgtgagactgataacgacaGCCAATAtagaaaacaacataaaatttTACCATAGATTCTTTATTAGAAACACATCACATAAGCGGTAATTaagtttttgtaatttgatgcaaatatataacacaaagtatagctttaaaaatgtacataaaaaatcTGGATATTAAAAGGAATTAACTTTCAAGGCATTATGATGATTATGActgttacagttttttacaattgttttgtCACAAATTTCAGAACTCTGGTGTCAATTTTtaaaactctagacacaaaattCACAACCTTTGccaaaattgtatgtttttgcaAAACTCTTAACTCTTTTTTTCAAATCCTTGGATACAACACAAACAAGTCAAAGATACTTTGTTCCCTGAACTAAGATCACCTTTTCaatataacacaattaaacaTCGAATTAATCccatttcaaaatgcaactcaaacattaaatttgaaataaatgcgTATTAATTTACTAAACATGATGTTATTATCAACTGATACAAACACTCAAAATAACACATTACTGCTGCATTACTCTTGATGTGTGGAAACTGATGTACAATATTACATGTTTAGATGATGAAAGTACCACAGAAGGTGACCAACTGGACTACATTATCTATAGATTTCATCTTTATTCATCCTTATttcatatttatcttttttttccccatgtACCACTTATACAGACAATGTTTTCATATTTGACATTACTGTGATATTAAGCCCAATCACAGCAGAGAAATGTCAGACCTGGATTCACACTGACAGAAGGTTCTTTCCAAGGTTTTTGAGTAATGAAAACACCACTGTGATGTAGAGGAGAACCTGCAATGCTATGTATGTATGCTATGGCCACTGTAGTAACCAGGTCTCTACTCAACCGAACATCAATACATCATTCTGTATTTGGACAGCATTGCTCATAGAAGGCCAGTGTTCAGTAGTGTACACCAAAGATACTTTATTGGTTTAAGTGATTGCTTAGGTACAGGTTGGCATGAATTTAACAGGACACACCAGGACTAAACATTCCTGATTCAGCCAAAGAGTTTGTctgcatataaaatgtattattgttctgcaataaaaatgtatattaagtcCACTTGTTGTA
>TCONS_00065148
GGAAGTGTGCGTCGGTCGACTGATGTTGAGCAGTTTGTTGAGAAGCAAAAATATAAACTGGCATCGGAACAATTAATAAATCAGGTGGGATTGTTGGAAGAGTGGATAGGTGATGGCATCTCACACAAACGACGAGAACAAACGAAAAATCACTTGAGAATAAAATAAGTGGAGAACAAACGCTGACATCTGTGCGGCGATTGCTCCCCCACCCACCAACCCCCACAATGTATGAACTACTTCAACAGCTCACGGAGGTTAGCATTTGCCAGCAACAAATAGCTGAACACCTCGTATCCCGACAAGATCAAACTGAGCAGGAGCTCGTGGCACTGCGAACCGCCACTACACAATGTGT

Function

symbol description
si:dkey-43k4.5 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNS1 (potassium voltage-gated channel modifier subfamily S member 1).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1902259 regulation of delayed rectifier potassium channel activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-82 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNS1 (potassium voltage-gated channel modifier subfamily S member 1).

Ensembl:

ensembl_id ENSDARG00000026084

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063838 False 5891 mRNA 0.36 3 21633286 21678263
TCONS_00065148 True 358 lncRNA 0.47 2 21670190 21678210

Neighbor

gene id symbol gene type direction distance location
XLOC_032834 ppp1r12c coding downstream 16627 21588205 ~ 21616659 (-)
XLOC_032833 si:dkey-43k4.3 coding downstream 50648 21576164 ~ 21582638 (-)
XLOC_032832 psmd12 coding downstream 98985 21525543 ~ 21534301 (-)
XLOC_032831 cacng4a coding downstream 111531 21513363 ~ 21521755 (-)
XLOC_032830 NA coding downstream 124247 21504503 ~ 21509039 (-)
XLOC_032836 mtmr14 coding upstream 18865 21697128 ~ 21726758 (-)
XLOC_032837 setd5 coding upstream 131370 21809633 ~ 21830477 (-)
XLOC_032838 si:dkey-19e4.5 coding upstream 182824 21861087 ~ 21873266 (-)
XLOC_032839 plxnb1b coding upstream 196669 21874932 ~ 21988375 (-)
XLOC_032840 cfap100 coding upstream 364864 22043127 ~ 22064158 (-)
XLOC_032829 NA non-coding downstream 135251 21496479 ~ 21498035 (-)
XLOC_032825 NA non-coding downstream 602578 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 620239 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 985953 20647227 ~ 20647333 (-)
XLOC_032842 NA non-coding upstream 502999 22181262 ~ 22181876 (-)
XLOC_032844 BX537277.1 non-coding upstream 862719 22540982 ~ 22541076 (-)
XLOC_032846 NA non-coding upstream 1339790 23018053 ~ 23018480 (-)
XLOC_032848 NA non-coding upstream 1532288 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1716580 23394843 ~ 23394899 (-)

Expression


Co-expression Network