XLOC_032840 (cfap100)


Basic Information

Item Value
gene id XLOC_032840
gene name cfap100
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 22043127 ~ 22064158 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063847
AAAGGGAAAGGACCTCGCTTCTGGATGTTTGGGGATTTAGACCAAGAACAAATCAAATATTCATGCGAGATAGTTATAAAAAGTGTAGCTTAGGGAACGTAGATTGTAGTTAATGTTTTTAGAGTTTTAACGTGGAGCAGCATGTCCTCATCTGAATTAGCAGCACACAaAAGCAGTGATGATGTGAATCCTTTCAAAATTCCTGAGCTCGACAATCTTTTCCAAATGAGGCACAAAGAAAAGAATCGAATGAAACTGCAGGAGCACCAAAGTAAGCAGGCTTTACCTGTCAATGAGAAGATGACATTTGCAGGCAGAACAAGAACAAGACAAACCAAACTGAAGAGTGAACTGAAAGAAGGGGAAAGTAAAAtgccacacatacacactcaccaaCAGCTCCAGATGACACCTGCATTGAGGGCATGTATAAAAGACCCAAATACTGATAGAGGAAGTATGCACGAATATATCGCTAAAAAACGTGAGCTGTTCTTACTGGAGtactctctggaaGTAAAGAGAGGAGAGATTCAACTGCTAGAGCAAATGGCTGCAGAAGAAGAGGAAAAATTGTCAAGAGCTGAAAAGTTCTTGGAAGACGACACCATCTTGTTTGAAGAATTTCTGAAGGAAAATGACAAGAATTCAGTGGAGGCTATCAAAGTTGCTGAACAGGAGACCAAAGTAAAGCTGGAGAAAGTTGCTGAAATCAAGAAAATTACTTCCAAAATGGTGGCAATCAGGAGTGACATCTCTAAATATGAGGACATCCTGAAGGAGTATAAAAATTATAAAGAGTTTCTGCTTATGCTGTCACCCCAAGAGTGGCAGGAGGAACAGAGATCCAAGAGCAAACACTCAACTCGCCCCACAAATAAAGAGAGTGATGGAAAACAGACAGAGAAAATCAAGAAGAGCAGAGAGAAAAAGACGGTTCCTCCAGACAGCAAGCGTGGAGAAAGACAAACGGCTCGTGGTTTTTCATCCTCTCAGGAGGCCAGGACTTCATCTAGGCAAAGTGTGAAGTCCAGCCCTCAGAGCAACAAAATATTTGCACCTGGGACTGACAGCTCAGATTGTGAGGAAGATCCACAGATATATTTCAAAGACCCCCAGGAACTATTAAACCTGATGACTGAGCTGGAAGAGCAGAACCTTTCCCTCATCCAGAACACCAGAGAGACAGAAGAGGCATTGGAGGAGTTCAGACAGAATGCTGAAGTGATTCACAAGAACATGGAGACTGAGTCAAAGCAGCTAAAAGCGCAGATTGATATCATGACTGAGACCATTCAAAGAGAGAGGGAGCGAACAGCCGAGCTAGAACTGAAAGCCAAACACTTTAGCTTTGGACAATGCAAACCTGAGGACCAGGACAAAACGTTTGACACACTGAGCCGCAAGGTGGAGGAGGTATATCATTGCTGTGTTGGGGAGACAGAAGCAAACCTGAGCACTCTACAGATGCTGATGGCCATTGAAGAAAAACTAGGAGAGCTTCTGGAAAATGCTGAAAAGATTCCAAAAGACCAAATGAGCACAGCTGAACGCGCCAAAGAGAAAGAAAGGAGAATGAGACTGCGTGACGAGAAGGCATATTTGCAGAGGAAACAGCAGGAGGAAAGACAGAAAAAAGCCTTGGAAAGATCTCGGCTTGATGTCAAGAAACCATCTGTCAAGAAGTTGATGCCACGCTCTCAACCTCCTGTCCGCAAACTTCACTCAAACAAGAACAACGAAACTACAGACCGGGAGAATGAAGAGATCCTACATTTCTTTAGTTGAATTATTTTTTCAAGTATGTTGATATTCAAACGACTGTCCTAATTTCATTTCTATACAATTAAAAGTACATAGTAGGTAACATTAAGCAAAAAATTAATTCATTGTATTTGtggtttaatttctttaaaacttGTGTAAGACTGTATAAACCATGATCatgtcaaaaaaagaaaaacatttactgACAATTAGATTtcaattcaaatgtaaaattttattaaTGTGTTGAAGTAAACCAAACCTAATAAATACATCATCACTTT

Function

symbol description
cfap100 Orthologous to human CFAP100 (cilia and flagella associated protein 100) and CCDC38 (coiled-coil domain containing 38).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-352 Orthologous to human CFAP100 (cilia and flagella associated protein 100) and CCDC38 (coiled-coil domain containing 38).

Ensembl:

ensembl_id ENSDARG00000111474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063847 True 2051 mRNA 0.41 14 22043127 22064158

Neighbor

gene id symbol gene type direction distance location
XLOC_032839 plxnb1b coding downstream 54752 21874932 ~ 21988375 (-)
XLOC_032838 si:dkey-19e4.5 coding downstream 169861 21861087 ~ 21873266 (-)
XLOC_032837 setd5 coding downstream 212650 21809633 ~ 21830477 (-)
XLOC_032836 mtmr14 coding downstream 316369 21697128 ~ 21726758 (-)
XLOC_032835 si:dkey-43k4.5 coding downstream 364864 21633286 ~ 21678263 (-)
XLOC_032841 gga1 coding upstream 55031 22119189 ~ 22146258 (-)
XLOC_032842 NA coding upstream 117104 22181262 ~ 22181876 (-)
XLOC_032843 nprl2 coding upstream 288065 22352223 ~ 22369125 (-)
XLOC_032844 BX537277.1 coding upstream 476824 22540982 ~ 22541076 (-)
XLOC_032845 nol11 coding upstream 893551 22957709 ~ 23002373 (-)
XLOC_032830 NA non-coding downstream 534088 21504503 ~ 21509039 (-)
XLOC_032829 NA non-coding downstream 545092 21496479 ~ 21498035 (-)
XLOC_032825 NA non-coding downstream 1012419 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 1030080 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 1395794 20647227 ~ 20647333 (-)
XLOC_032846 NA non-coding upstream 953895 23018053 ~ 23018480 (-)
XLOC_032848 NA non-coding upstream 1146393 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1330685 23394843 ~ 23394899 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000130_01631768_01639817 NA coding CI01000130 null 1631768 ~ 1640670 (-)