G1378888


Basic Information

Item Value
gene id G1378888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45045109 ~ 45062592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1575123
ggctatatgcagtagtgaggctatatacagtagcgaggctatatacagtagtgactctacaacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctatagcagtagcgaggctatatacagtagcaacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgacgctataacagtagtgaggctatatatagtagcgacgctataacagtagcgaggctatatacagtagtgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagcgacgctataacagtagtgaggctatatacagtagtgacgctataacagtagtgaggctatatacagtagtgacgctatagcagtagtgaggctatatacagtagtgaggctatatacagtagtgacgctacaacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacaatagcgaggctatatacagtagcaacgctataacagtagcgaggctatgtacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgatgctataacagtagcgacgcTGTAACAGTagtgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtatcgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgatgctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgatgctatatacagtag
>TU1575127
taacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatatagtagcgacgctataacagtagcgaggctatatacggtagcgacgctataacagtagtgaggctacatacagtagcgacgctacaacggtagcgaggctatatacagtagcgacactataacagtagcgacactataacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagtgaggctatagcagtagtgaggctatatacagtagtgaggctatagcagtagtgaggctatatacagtagtgaggctatatacagtagtgactctacaacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctatagcagtagcgaggctatatacagtagcaacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgacgctataacagtagtgaggctatatatagtagcgacgctataacagtagcgaggctatatacagtagtgacgctataacagtagcgaggctatatacagtagcgacgctacaacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacaatagcgaggctatatacagtagcaacgctataacagtagcgaggctatgtacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgatgctataacagtagcgacgcTGTAACAGTagtgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtatcgaggctatatacagtagcgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgatgctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgatgctatatacagtag
>TU1575121
ggctatatgcagtagtgaggctatatacagtagcgaggctataacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtagtgaggctatatacagtagtgaggctatagcagtagtgaggctatatacagtagtgaggctatatacagtagtgacgctacaacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtaacgaggctatatacagtagcaacgctataacagtagcgaggctatatacagtagcgacgctataacagtagtgacgctataacagtagtgaggctatatatagtagcgacgctataacagtagcgaggctatatacagtagtgacgctataacagtagcgaggctatatacagtagcgacgctataacagtagcgacgctataacagtagtgaggctataacagtagcgacgctataacagtagtgaggctatatacagtagcgacgctataacagtaacgaggccatatacagtagcgacgctacaacagtagtgaggctatatacagtagctacgctataacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1575123 False 1133 lncRNA 0.43 3 45045109 45062592
TU1575127 False 1249 lncRNA 0.44 3 45045109 45047981
TU1575121 True 605 lncRNA 0.43 5 45048569 45062592

Neighbor

gene id symbol gene type direction distance location
plxna2 LOC106567158 coding downstream 80418 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 448896 44560201 ~ 44596213 (-)
LOC110492088 NA coding downstream 504352 44538351 ~ 44540757 (-)
LOC118939541 NA coding downstream 549841 44489262 ~ 44495268 (-)
LOC110492087 NA coding downstream 579368 44461373 ~ 44465741 (-)
LOC110492092 LOC106567333 coding upstream 241128 45303720 ~ 45307537 (-)
LOC110492093 LOC106567160 coding upstream 245754 45308346 ~ 45315784 (-)
slc48a1a LOC106567162 coding upstream 253356 45315947 ~ 45320378 (-)
itga5 LOC106567163 coding upstream 315673 45378265 ~ 45432804 (-)
LOC118939605 NA coding upstream 392970 45455562 ~ 45455616 (-)
G1378794 NA non-coding downstream 60330 44984559 ~ 44984779 (-)
G1378736 NA non-coding downstream 131921 44912888 ~ 44913188 (-)
G1378733 LOC106609167 non-coding downstream 136188 44908456 ~ 44908921 (-)
G1378724 NA non-coding downstream 146081 44898794 ~ 44899028 (-)
G1378717 NA non-coding downstream 154493 44890262 ~ 44890616 (-)
G1378917 NA non-coding upstream 34305 45096897 ~ 45097120 (-)
G1378923 NA non-coding upstream 38560 45101152 ~ 45101359 (-)
G1378979 NA non-coding upstream 92186 45154778 ~ 45154986 (-)
G1378980 NA non-coding upstream 92795 45155387 ~ 45155676 (-)
G1378989 NA non-coding upstream 99848 45162440 ~ 45162788 (-)
G1378530 NA other downstream 491562 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1352271 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1706554 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 1820726 43217803 ~ 43243705 (-)
LOC110492109 LOC106567177 other upstream 555625 45613938 ~ 45627786 (-)
G1380431 NA other upstream 642518 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 1353968 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1536105 46598697 ~ 46601691 (-)

Expression


Co-expression Network