XLOC_032841 (gga1)


Basic Information

Item Value
gene id XLOC_032841
gene name gga1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 22119189 ~ 22146258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063848
CAggtttgttttaaacaatatttgaatgtaaaaacaacaacaacaacaacaaaaacaagattttCTGTCTGCTTTCATAAATGAAAAGTGTTTCTGTCCAAAATTGACATGTAAGTTAACTCTTATTGCAAGAAATGTTAACAGACTCTCAGACACATTTAGACTTTAGTACTAGTTACACAACATGGCTaagttttatataactttaatttaatatataattcatACATATAAACAGGTCTCCTGGTTCATGTTCACtgcatgaaaatgaaaaatgaagtATGTAGTCAGTCATCACGTGTTTCATCGCGAGATCTTGGTCTTGTGATCTCGGGTGAAGATGGCGGCTCCGCCTGACGAGCAGAGCTTAGAGTCCCGCATCAACAAAGCAACCAACCCTTTAAATCGAGAAACTGACTGGGAAAGTATTCAGCTCTTCTGTGACCAACTCAGCAATGAACCTGAAGGTCCACAGCTGGCCACCAGGCTACTCGCTCACAAGATTCAATCTCCTCAAGAGTGGGAGGCCATTCAAGCTCTCATGGTTCTAGAAACTTGTGTGAAGAACTGTGGGAAAAGGTTCCATAATGAGGTGGGAAAGTTCCGTTTCCTTAATGAGCTCATCAAAGTGGTATCACCTAagTATCTTGGTTCTCGAGCTCCAGAACCGGTGAAGAAAAAAGTTTTAGAAATGATGTACAGCTGGACTGTGAGTTTACCAGAAGAGACAAAGATTTCTGATGCCTATCAGATGCTTAAGAAACAAGGTATTATTAAGCAAGACCCTGATCTCCCTGATGATAAGCCCTGCCCTCCTCCTCCGCCCAGGCCCAAGAATGCAATCTTTGAGGATGAAGAGAAATCAAAGATGTTGTCCCGTCTTCTGAATAGCTCTCATCCTGAGGACCTGCGGGCAGCAAACAAACTCATCAAAGAAATGGTTCAGGAGGATCAGAAACGTATGGAGAAGGTGTCAAAGAGAGTGAATGCTATTCAGGAAGTGAAGGAGAGTGTTGGGCTTCTCACACAGTTACTGGGAGATTACAGCAAAGACAGCTCCTCACAAAGCAATGAGGAGCTCATTAAGGATCTGTACCAGCGCTGTGAAAAGATGAGACCAACTCTGTTCAGATTGGCCAGTGATACTGAGGACAATGATGAAGCTCTTGctgagatcttacaggcGAATGACAGCCTAACGCAGGTGATCAATCTGTACAGGCAGCTGGTGAGAGGGGAGGAGGTTAATGGAGAAGCGAGCAGCTCAGCCACACACCCAGGTAGCAGTAATGCACTTTTGGATCTGACAGGACTAGACACTTCCCCTTCTGCTCAGTCGTTCTCTGAATTTCCCTCTCAGACACAGGAGCTAGGCATCAGTCTTCTAGATGATGAGCTTATGTCTTTAGGATTGACTGAAGTTAATTCTAATCTGACTTCTTCCCAATCTGGAGATGCTATGGGGTGGAATACTTTTCAGTCATCAGAAACTGAGGATACACCTGTAATGCCGGAACCTGCAGTGCTGTTGCCAGTGACAAGTGCTACTAAGACACCTGTTCCTGTGCCTGTGACATCCACTAAATCCCTAGATGAGCTAGACCTGTTGGGTAAGACTCTGCTGCAGCAGTCTCTACCTCCAGAAGGTCTTCAGGTCAAATGGGACAAGCTTCAGTCTCAGTCCAAACCTACACTACGAGACCTTCAGATCAAGTCTGGAAATAACGCCGCTACAAGCCCAAGTCCTGTGTTGAGCTTTTCTTCAGAGCCAGGATCTCTCCTCAATTCTCAGCTCACACCTCAGGATGATGTATCATTGGTGAAAGTGACTGTGCCCTTGGAGTCTATCAAGCCTAGTAGCATGTTACCTGTGACAATTTTTGATAAACACAGCCTACGAGTTTTGTTCCATTTTGCAAAAGACCCTCCGCCAGCTCGGCCAGATGTTTTAGTGGTGATTATCTCCATGTTGTCCTCTGCCCCTTTGCCCATCACAAATGTACGATTCCAGGCTGCTGTTCCCAAGAATATGAGAGTGAAGTTGCAGCCACCATCGGGATCAGATTTACCTGCCTTCAACCCTGTATTGCCCCCTGCTGCCATTACACAGGTCCTGCTTTTAGCTAACCCTCACAAGGAGAAGGTCCGGTTGAGATACAAACTGACTTTTGATATAGGAGAAGAATCACATGACGAAAGTGGAGATGTAGAGCAGTTCCCTCCGCCAGAGTCATGGGGAAACATTTAAAGCAACAGACTAATGATttcctgatgatgatgatgatggcagTTTGTATTCAGACTATTACTGTATGTCACTGGCTCTGCCTTTCCAGCTCCACCTCTCTTTCCTCTACATAACGAGTGCTGAAGGACGCCTTGAAATCGGCTCATTTGATTTTTTAATTCCAGTTCTGTCTTTTTCACTTCTCGTTTTGCTTTCTGTCATGTCAGACCCTTTATGTATGGAGCTTTAAATGTTTGAAAGCTAGAGATGagagttttgtgtttgtgtgatgtTTCCATGTGTGCATCCAGACTCTGGAGTCTCGCTCGGCTGTAATGACGTAGAGCAGCTTTATTTTCTGCACCGATTGGCTCATATGTGCTGATTTATACGTTTTGATCTCTAGCACACATTCTTGTTTTTTGGTTCGATTATATTGTTAGGCTGCACGTGTTCTCCCTGGAAGCGCAACAGGATCCAAAACTACTACTTAGCAGGAAATACTACAAATTGAAATGAGTGACATTACAAATCAAACAGCCCCTCTTGTCAAGACGTTTGTGCATCTCATGGTTGCCATTGGTCCTAAATTGCCCTTGTTCCGTGCACTGTACTGCTCTTGAATTACATGCTGATGTCTTGTTTATAATTACCGTACGTGCCTAATCAGAGGATTCCTTTTCATGCTAATATAGACATTTATGTGTGATGCTTGATTTAAATTAACAGTATGGTATTTGTCCTTTTTTGTTTGAGAATGTCTTTATTTTGTTCCCTAATTTCAGATTTCCAGTTTCACATTAATTATGATCTTTCTTTCTCTCAATGCAGTACAGTGTAATTATTGCTATTACACCCTTGCCATTCTTAGAATATACATGTTTGTCAAATGAATTCTGCACTTTGATGATGCTAGCAGATGGTTTATATAATGGTACTTGGGTCATGTAAAAAGAGAAATTGGAATTTACGATAGACAGGAACTTAAATCACTGTGGTCCTAAATGAATTTGCTGTAGATGCTCACTTCACCCAGTTAAAGCCAGATGATTGATGTCCATCCACcctgacaaaatgtaaataatgctggTATTGCTATTATGTACATTTGCCAAAAACTAATACAGAGACTAAACATGGAGCAGTGAATGTAGTGCAAATATGTATTTAAGGGAAATAAACTTATTCTTTTTCTCTGGGGTTTCAAATTTATgccgttttcattttatttaaatgaaaaatctttAAGCAAGAGTCAAACAAGATCATTCTTAAACAGAGTGAACACTTTATTAAAAtctgtgaaaaaaagaaaaaactacaaaagggtgtttttttttccttcccagGTGCCAGCCAGTCAAAGAACTGGTGGTGTGATCAATCAAATGCCACTTAATCGGTCCATGATCCCTGTGGAGAGCTGTTTGTAAAGCccaattatacaataactaattaCACTACAGAGCTACCTTGATAAAAATAAATCCACAGCATTTCTGAAACTGAAAAAGTTGATGGACAGTAGGTGGTTTTCTTGTGTGAGTGAGATCAAAATGGTTACAGGTTAGCAAAACTAATCAATAAAGTACATTAATAAAGCATATGTTGGCAGATTGACACAACTTTTAAAAACACCAATAAATGTTATTGAATTTTAAGTAAATGTATAAAAGATTAAGAATATAGACATGAAAAGGTGAAATAACTACCAATAATAGATCTTCAATAAACTACAGCTGCTTCTTAAGTTTGGCttcagatataaaaaaaaaaa

Function

symbol description
gga1 Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and early endosome membrane. Orthologous to human GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-13 Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and early endosome membrane. Orthologous to human GGA1 (golgi associated, gamma adaptin ear containing, ARF binding protein 1).

Ensembl:

ensembl_id ENSDARG00000038537

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063848 True 4004 mRNA 0.41 17 22119189 22146258

Neighbor

gene id symbol gene type direction distance location
XLOC_032840 cfap100 coding downstream 55031 22043127 ~ 22064158 (-)
XLOC_032839 plxnb1b coding downstream 130814 21874932 ~ 21988375 (-)
XLOC_032838 si:dkey-19e4.5 coding downstream 245923 21861087 ~ 21873266 (-)
XLOC_032837 setd5 coding downstream 288712 21809633 ~ 21830477 (-)
XLOC_032836 mtmr14 coding downstream 392431 21697128 ~ 21726758 (-)
XLOC_032842 NA coding upstream 35004 22181262 ~ 22181876 (-)
XLOC_032843 nprl2 coding upstream 205965 22352223 ~ 22369125 (-)
XLOC_032844 BX537277.1 coding upstream 394724 22540982 ~ 22541076 (-)
XLOC_032845 nol11 coding upstream 811451 22957709 ~ 23002373 (-)
XLOC_032846 NA coding upstream 871795 23018053 ~ 23018480 (-)
XLOC_032830 NA non-coding downstream 610150 21504503 ~ 21509039 (-)
XLOC_032829 NA non-coding downstream 621154 21496479 ~ 21498035 (-)
XLOC_032825 NA non-coding downstream 1088481 21030441 ~ 21030708 (-)
XLOC_032824 NA non-coding downstream 1106142 21012606 ~ 21013047 (-)
XLOC_032820 LO018113.1 non-coding downstream 1471856 20647227 ~ 20647333 (-)
XLOC_032848 NA non-coding upstream 1064293 23210551 ~ 23214794 (-)
XLOC_032849 CR376761.1 non-coding upstream 1248585 23394843 ~ 23394899 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000130_01680558_01699524 GGA1 coding CI01000130 null 1679559 ~ 1699524 (-)