G1378980



Basic Information


Item Value
gene id G1378980
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45155387 ~ 45155676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1575224
tgccaattgcacactctttcaaatctgagacatctgtggaattgtgttgtgggacaaaactgcacaatttagagtggccttttattgtccccagcacaaggtgcacctgtgtaatgatagtgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggcaaaggagaaatgctcgctaacagggatgcaaacaaatttgcgtacagaatttgagagaaataaatcATGTTTATGATAGAGAACAATTGTTTCTTGCAAATGGATATACATC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1575224 True 290 lncRNA 0.40 1 45155387 45155676

Neighbor


gene id symbol gene type direction distance location
plxna2 LOC106567158 coding downstream 190696 44621739 ~ 44964691 (-)
cd34a cd34a coding downstream 559174 44560201 ~ 44596213 (-)
LOC110492088 NA coding downstream 614630 44538351 ~ 44540757 (-)
LOC118939541 NA coding downstream 660119 44489262 ~ 44495268 (-)
LOC110492087 NA coding downstream 689646 44461373 ~ 44465741 (-)
LOC110492092 LOC106567333 coding upstream 148044 45303720 ~ 45307537 (-)
LOC110492093 LOC106567160 coding upstream 152670 45308346 ~ 45315784 (-)
slc48a1a LOC106567162 coding upstream 160272 45315947 ~ 45320378 (-)
itga5 LOC106567163 coding upstream 222589 45378265 ~ 45432804 (-)
LOC118939605 NA coding upstream 299886 45455562 ~ 45455616 (-)
G1378979 NA non-coding downstream 401 45154778 ~ 45154986 (-)
G1378923 NA non-coding downstream 54028 45101152 ~ 45101359 (-)
G1378917 NA non-coding downstream 58267 45096897 ~ 45097120 (-)
G1378888 NA non-coding downstream 92795 45045109 ~ 45062592 (-)
G1378794 NA non-coding downstream 170608 44984559 ~ 44984779 (-)
G1378989 NA non-coding upstream 6764 45162440 ~ 45162788 (-)
G1378990 NA non-coding upstream 10076 45165752 ~ 45166046 (-)
G1379007 NA non-coding upstream 21516 45177192 ~ 45177612 (-)
G1379017 NA non-coding upstream 26103 45181779 ~ 45182003 (-)
G1379060 NA non-coding upstream 57086 45212762 ~ 45213108 (-)
G1378530 NA other downstream 601840 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1462549 43692320 ~ 43692838 (-)
G1376991 NA other downstream 1816832 43337162 ~ 43338555 (-)
LOC110492063 LOC106567124 other downstream 1931004 43217803 ~ 43243705 (-)
LOC110492109 LOC106567177 other upstream 462541 45613938 ~ 45627786 (-)
G1380431 NA other upstream 549434 45705110 ~ 45705453 (-)
LOC110492748 ppdpf other upstream 1260884 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 1443021 46598697 ~ 46601691 (-)

Expression



Co-expression Network