G1380345


Basic Information

Item Value
gene id G1380345
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45646351 ~ 45653128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1576748
TCAGCAATAGCACTTTATTTAAAACACACAACCAACCCTAAGCCACAATACTGAATGACAAGACCAACTGGCTGCAGCAAACATCGTATAAAATAGATTTAGGTTCAAATGTTTAATAAATCCTTTAAAATCATTTTAGTGTCAAAGACAGATGCAGATTCTTCCAAAATTGTGAATTATCTTTTACATTTCTATAACAAATTACCATTTACATATTGTCCACACAATGGAATAACAAGGCAAAGTGCTTTCAGGATTGATTGCATTGTCAAATAAAGAAATGGCTTGAGGTTTTTGGAGGGATAGTGGGGTGAATGGGAATGTGGGGGCAGGGCAAGGATCTGTCTGGTCAGATACCGGACCTCTCCCTGGTCCCCTGTTCACATGGAATTAAAGCAGCTATACAGAGATTATGGTGGGGAGGCAAACACCTACCAACAGTTTGGTTTGGAGTGGATTAGTGTTTTTGAAGGCATACGGCTTGAGGGGAACAAAACTCACCCACGTACAGAATATAACAATGTGCATATAACCTGACTCCCCCATGACAACctgtgaaaaatatatattatgaTAGTACTAAACCAGCTGTACGTACGTATGCAATAACTAACCCAAAAAAACATTCACATTCCAGGAAGCTGTAAACTCTAACTGAGATGTAGAGCACATGAAAACATTTGTACATCGATTCCAGACaaagacaaacagaaaatgcCAATGTACTCTTTCATGTAATTCATCCCAAAAACAAGGGGTTTTGCTATGCAAGGAGCACATCAGTCAAAATTAATGTCTAGTGTGGGTAGAAGACATGAGTCATAACACAGTCTGGCTTCACATCCCAGTGCTATTTTCTAATATGTTTTTCATAAATAATTTCATGTTGAACACACAATTATACATACAATCAAGCACACTTCATGTTGAATTATAATTGTTCATGGTAAAATTCTAAGGTTCTCATAGGCTACTGTGTATTTGTTTGTCAAAACAGGTGGAGATGAACTCAAAGCTGCAATTTAGAGGTAGGAAAAATGCTTCTACTGAAAACCGCAAGAAATGCAAACAAGTTTATTTCCATGAATACCATTATGTACCAACCTTATAGAATTTGTAGTAAGTGAGAGGCGTGTTTATATTCCTTGACTGGCCATGTTTGAATTCATTAATTTGGAAATGGAGCTACATCATTGGTCCTAGAGCACAAGCTGGTGATGGCATTTTCTtcttacagtagaatagtatttGAAGGTTTGTAAATGAGGTAATCAAGAGTTAAAATAGGGAATGGTTCCTTCCgctgggggggaaaaaaatacagaaaCCTGTAGATCGGTCAAAGATACTACCATTCACCAGCAGAGAAGTTGTTAGTTTCTGCAAGCTTTGCTGTTGGGTATTGGAAAGTTTGGCGGACAAACCAAATCTCTTTTTAAAAAGGTGCATTGAGAAACCATTCGATTACAACTAATCATGTGCCCTAATTcagactcctccccctctcctggtATGGGGTCCACTCCATAGTATTTACAACAGATAAGCCACTGAGTAAAAACAGGCAACTAACCCTTAGGTCGGTCTTTATCAGTTCACATTCAGTTAGGGTGCTGCAGAACAAATAAAGAAACAGCAGAAGGACCAACAAATATCACAGGATATACCCAATGAATACATACATCCTTTCCACATGTATTGCTCAGGGAGCACATAGGCCATAGAGTACCTCCAACTGATAGTGTCCAAATCACTGTGCTCTCGGAGAATCCCCATTATGGAGATATACTCCAGAGGTGGTCTGGCCACTGACTTCATCGTGGGTGACGTATAAGCTGCTTGTACAGCAAATTACTGTTGTAATGGCTAAAGTGGTTTTCGAATATTTCCTACCTCTGCTGGATTTAAAAGGGGAATTTCAAGGGGAACAAGCAATATCGTACGGGCTTCCAGCATAGTACATGTCAAAAAGGTGTATACAGTAGGTATACACGTCCTACCCTAGGCACTGAGCTGATCTTACGATACTGGTACACTTTTTTCGCTACCTTTTCATTTCCATTGTCGTCGATATGTCCGATTTAGACAGGCCTGCCTACTTACATTAAGGGAGACCTGCCATTCACCCCCTCAACATTATACTTGTGCAGTTCAGGAAATGGTCTCAACTTTCTTAAGCTGTTCTGATCTTCACTGTACAAGTTCATCACACACACTGAGCAAGTAGTAAGATTGTGAAAGACGCACACCCCCATTTAGTGAGGGTGAGATGAATTAGGGGGGAGTCTCTCTTAACGTTTCTTCTGAAAACAAGAAAGTATTTCAGCATTTCTTTAAACCACTTAAATttactccccccccccaaaaaaaaaacatttaatttgataCGGAGTACGACGCatacgtacacacctacacacgcAAGCAAAACATTTCAGATTCAAGGAGATTCCCTCCATAAAACGCCATCCAACTGCAAGAACAAAAAACACACATGGTTGATCAACCAGTCAAATCATCTTGTACATGGTCTCCCTTATGAGCAAGCAGCTTTGATACTTGAATATCAAAAATCACACAGTCCTAAGAATGCAATTCCATATTCTAGACTCTAACAAGTGCCACTTCTCTGGATGCAAAGCAGTGGGGAAAGGTTCCAATCCTACTGCCAGCCACAGGAAGTCTATTTTGTTTTTGGCCTTGAAAACGCAGGACATGTTCTTTTACTTGAGGAAGGAAATGATAAATAAGGTTTATTGCACTCGTCTTTTTCAACaataataacatttttttttaaaagaggcAAGCTTAAAAAGAGGACGATCTACCTCGCCCTCATGCTAATATCTGACAACGCATGTTATATTACAGCACAGTCACACTATCAACGCTACTAAGAAACCCCTACTTTCAATCAGTCTAATACAAAAACACTCCAAACAGTTACAACCAACACATAATCATTACTACTGTACCCCAATAGGATTTTCACAACTTGATCTATTCTCTACAGCTAGCGAGTTTAATTAAATACATACAACTAAAACAATCTGAATTGATATGCTCAGACTTCAGGAGAAACTACATTTACAGTACTGGTACTGACCATCCAATCTCATGCTTTCCTCATCTCCATGACCACCTTTCTTGGCTCTAACCGCCACAGCATTGAGAGCCATCCTTGAGATGACATTAAAGAATAAAAATGGTTCCATCTTTGGATTTGTGCTTTCAAAAAGTTACTTCAATATTGGTGCAGTCAACATCAGGTAGGATATTGTTCAGATAGTTCACTCCATATGACTCAAGTTCGGAGACCCATAGCATGCACACAGAATCGGGCCAAGAATGTAAAACACGAGTTTCTTATTATAGCtcacatcacatactgtaggttgaGAATGTTCTTTTCAGAGAGATGCGCTCTTCTATGCTTTTACATGTCATTCAAAAGGCTTCCGGAAGGTATAAATGGAAGACCATGCGGTAGACAGAGCATTCATTTAAAAACACATTAAAAAAAAGGCACCAACCACCTCTGAGCTGGTTATCACACAGGTCCAAATGATGGAAGAATCGTGATGAGACCACAAGCAGGGGGAAAGCTAGCATGAGTGATACTCTACAAAACCTCCCACATTAACTAACTTGAGGGGGTAAATAATTATGGCATAGCAGTCCCCCCACTATAGAATGTGTTTTCACACTACTTTTCCTCATGACCTCCATTGAATTACAGATTCTTCTGCCCTTCACATACTAGAACTCTAAATTTGGTCCTTAGAAATCACACTGACAACAAGGTAAGATGTCTGTTCTTTTTCTCCTCTCCAACCGGTATGGAGGTACTTAATTAACAGCGTTATTTGGTTTTAGAGGTGACAGTCGAGCTGACAAGACCGGTAATAAGTGAAATCCCAATTTTTCACTTACAAATATGGCAAAATCCCCCAAACAATCACAAGGCAACCTTGAGCAGTGTGCCACCAACATGGATGCATGTGCTTCTACACCAAAAGGATCTCTGTGTGCGACCGAAATGAcaccccattccctttatagtgcactacttctgaccagaggcccccccatagggctttggtcaaaagtagtgcactatgtagggcatagggtgccattcgggacacaCCCCATAATAGCAAAACCAGCAGAGATTTTAGCAGTCCCACTGGGAAACATAACTAACAAGATGTTAGGTGTTATAACTTAGTAGGTACTGCAATAAACTTGTTCCTTTGCCTTTAAAAGGCTCTGCTGTGAATTAAAGTTTGTTTTACATTTGTATTCGATGAAAGATACTTCAAGTAAGAATAGGGGCATCCATCGAGGACGAGGTAAATATATTCCCTGTTAACCATACATCTGCAAACATCAAAAACTGTCCTATAATAATTACAAAACACAGGCAAAGAAATTaccattcattattattattatccattTTTGCCAACACAAAGTCTGTCCAATTATAAATATTTGAAATCTTCCATCCATTCTTTTCTCCAGACTACCACCAACTCTATTATATGATTGCTTTCCACTTCCTACGATCAGTACTAAGTGGTTGAAACCATTAGTCACCACTGACATCATGACCTGTATCTGTGCCAGCAATGCTTCAAATCAGAACTTAATAATCAttcatcattataataataaaTGTTCATTCTaaccatggctaccacagtaaATGAGTCCAAACAAACACATTTTCTACTGACCAAGTACAGTATGACTATTATGCTTAAAGGCAAATAAAGGTTTCTATGGCACTAAAtggatgtagctagctaggtgcATTTTCCTTTTCAAAAACTGGCTACCAATTCATGTAAAAAAATGAAAGCATCTACAGCGTAGTTAAATGTCCTGTTCAGAAGATATTGTAAGGCAATCTTAAATGGTGTTCGAGATGAATGTTCACACCCTCCAACCTCCTGTCTCCAGTGTCAATATGTGGTTATGACATACACATAGGGGCCTCGGTATAGCTGAAACACATTTAAGAAAGACCCATAACAGGAAGACTATTATGACAATTATTTCTTTCTGCTACTTTATCATTTCATGTATGCCAGAGAAATGCAGTGTAATAGTTCAAAAGTCAGGAGATGGCAAATAGTCTTGTTCCAATTTGACCCTAGAGTCACATGTCAGTCAATTCATGGCTCAGATTTATATTCAGTATGTACATTGCTCAAAAGCATGCATATTTCTCAAACACATTGCTattcttttttaaaatgtttatattttttattatccAATGTACTTTGGCAAATAAGGCCCTAACTGTGACCTAAGATTATCACGTGACGACTACTCCGTAAATCTTCAATTGGCATCTATGAAATGCTTTGTTGGATTGGCCTTAAACACAATCGAAGAGCAATAGATGTGCTGCGCACGTCTTTCACAGTCATTAATGCTACAAATAATCCTTTCATTGCTTCTTAATATTAAACCCTAGGGAAATATATTTGACTTGTTTCTTTAAAGTCAGAATTATGATCTCAAGCTCCTTTACAATGAGTTCTCAGTCTATCAATGGAACACAGATATGGGGTACTCCCAGATGGGATATATACTGAAGAACTGGCGCCATCAGCTGGACAAGGGGATTGAAAAATAAaatctatatacatatatacacacacacacacacacacacatatatctgGCTCGTGTTCCTCTGCTCAGACGTAGCTGGCACATGCCAGATATGTAAAATACCTATCAGGTAACCACATCACTATGTTATAGCAATCAGGTGCCTGATGGCACGCAGTCGATGACGTGGCACGCAACCGTCGGCTGATGCATGCAGTGTCTGAACTGGGGAACGTGAACCTGACCTGCTAGCCAGACACACCTGCGGTTGGATGATTGAGGTAATCAGTGTCTCTATTGTACAACACGCATCCCTCAGTGTGGAGTTCGGCGAGGAGCCTGAGGAGGATACAAGCACGGCGAAAGCAAGCCTAGCTAAAATCACTGGACTAACCACAAGGACTAGTTCGTGGACCCTGGGATGGCATCAAATCAAACCGCACCGTGATGACTGGATTTTGGACCATGAGATCTTCTTAGCTTTAGAGTTTTGAAGTTAAATCTCAGTCAATGAAGCCACGTATACAATCCTCGCAATCTGCTCCTGTCTTTTGCACTTTAGCTACAACCCATATGTAAATATACATATGCATGTATTCAGACTGCACACAGATATGCTGAATGTGTTAAAGTGCTTAACTATCTCAAGTGCCTTGGATCAGGGCTAAAATGGAACTTCATTGTAGTGTGCATACAACTAAAATAATGCCAATATGATTTTCCTGTTGTTTGTCAATCAATCCATGTCATTTGGTTCCTGGTTCCACACAGTCCGAGACTATTCTCTCCCCCGGACAACACTGACTATAGGGCACAAGATGATATGCTACTCTGGTATCATAGTAGGTCCTCATGTTTCTCATCCAGAACTAATGCATGTCATTTAGCATTCATCAAGAGAGGAGGTTGTGGCGAAGCAATGAAATGAAAAAATGAGTCCCAGTGAGTCACTGAAATCTATTGATCCTCTAATGGAAAAGATGGtgtaaaaatatttaaattaaGTCAGGCAGAGCGCTCCAGTGGTCCGATACCACAAATCTACAACATATGTAGAGCCACAAGACAGGATACATACCAAAAAAGGAATTTCACACTTATCGGCTTTACTAAAAACACAAGTATTACTACCGGCCATATGAGAGTA
>TU1576749
TCAGCAATAGCACTTTATTTAAAACACACAACCAACCCTAAGCCACAATACTGAATGACAAGACCAACTGGCTGCAGCAAACATCGTATAAAATAGATTTAGGTTCAAATGTTTAATAAATCCTTTAAAATCATTTTAGTGTCAAAGACAGATGCAGATTCTTCCAAAATTGTGAATTATCTTTTACATTTCTATAACAAATTACCATTTACATATTGTCCACACAATGGAATAACAAGGCAAAGTGCTTTCAGGATTGATTGCATTGTCAAATAAAGAAATGGCTTGAGGTTTTTGGAGGGATAGTGGGGTGAATGGGAATGTGGGGGCAGGGCAAGGATCTGTCTGGTCAGATACCGGACCTCTCCCTGGTCCCCTGTTCACATGGAATTAAAGCAGCTATACAGAGATTATGGTGGGGAGGCAAACACCTACCAACAGTTTGGTTTGGAGTGGATTAGTGTTTTTGAAGGCATACGGCTTGAGGGGAACAAAACTCACCCACGTACAGAATATAACAATGTGCATATAACCTGACTCCCCCATGACAACctgtgaaaaatatatattatgaTAGTACTAAACCAGCTGTACGTACGTATGCAATAACTAACCCAAAAAAACATTCACATTCCAGGAAGCTGTAAACTCTAACTGAGATGTAGAGCACATGAAAACATTTGTACATCGATTCCAGACaaagacaaacagaaaatgcCAATGTACTCTTTCATGTAATTCATCCCAAAAACAAGGGGTTTTGCTATGCAAGGAGCACATCAGTCAAAATTAATGTCTAGTGTGGGTAGAAGACATGAGTCATAACACAGTCTGGCTTCACATCCCAGTGCTATTTTCTAATATGTTTTTCATAAATAATTTCATGTTGAACACACAATTATACATACAATCAAGCACACTTCATGTTGAATTATAATTGTTCATGGTAAAATTCTAAGGTTCTCATAGGCTACTGTGTATTTGTTTGTCAAAACAGGTGGAGATGAACTCAAAGCTGCAATTTAGAGGTAGGAAAAATGCTTCTACTGAAAACCGCAAGAAATGCAAACAAGTTTATTTCCATGAATACCATTATGTACCAACCTTATAGAATTTGTAGTAAGTGAGAGGCGTGTTTATATTCCTTGACTGGCCATGTTTGAATTCATTAATTTGGAAATGGAGCTACATCATTGGTCCTAGAGCACAAGCTGGTGATGGCATTTTCTtcttacagtagaatagtatttGAAGGTTTGTAAATGAGGTAATCAAGAGTTAAAATAGGGAATGGTTCCTTCCgctgggggggaaaaaaatacagaaaCCTGTAGATCGGTCAAAGATACTACCATTCACCAGCAGAGAAGTTGTTAGTTTCTGCAAGCTTTGCTGTTGGGTATTGGAAAGTTTGGCGGACAAACCAAATCTCTTTTTAAAAAGGTGCATTGAGAAACCATTCGATTACAACTAATCATGTGCCCTAATTcagactcctccccctctcctggtATGGGGTCCACTCCATAGTATTTACAACAGATAAGCCACTGAGTAAAAACAGGCAACTAACCCTTAGGTCGGTCTTTATCAGTTCACATTCAGTTAGGGTGCTGCAGAACAAATAAAGAAACAGCAGAAGGACCAACAAATATCACAGGATATACCCAATGAATACATACATCCTTTCCACATGTATTGCTCAGGGAGCACATAGGCCATAGAGTACCTCCAACTGATAGTGTCCAAATCACTGTGCTCTCGGAGAATCCCCATTATGGAGATATACTCCAGAGGTGGTCTGGCCACTGACTTCATCGTGGGTGACGTATAAGCTGCTTGTACAGCAAATTACTGTTGTAATGGCTAAAGTGGTTTTCGAATATTTCCTACCTCTGCTGGATTTAAAAGGGGAATTTCAAGGGGAACAAGCAATATCGTACGGGCTTCCAGCATAGTACATGTCAAAAAGGTGTATACAGTAGGTATACACGTCCTACCCTAGGCACTGAGCTGATCTTACGATACTGGTACACTTTTTTCGCTACCTTTTCATTTCCATTGTCGTCGATATGTCCGATTTAGACAGGCCTGCCTACTTACATTAAGGGAGACCTGCCATTCACCCCCTCAACATTATACTTGTGCAGTTCAGGAAATGGTCTCAACTTTCTTAAGCTGTTCTGATCTTCACTGTACAAGTTCATCACACACACTGAGCAAGTAGTAAGATTGTGAAAGACGCACACCCCCATTTAGTGAGGGTGAGATGAATTAGGGGGGAGTCTCTCTTAACGTTTCTTCTGAAAACAAGAAAGTATTTCAGCATTTCTTTAAACCACTTAAATttactccccccccccaaaaaaaaaacatttaatttgataCGGAGTACGACGCatacgtacacacctacacacgcAAGCAAAACATTTCAGATTCAAGGAGATTCCCTCCATAAAACGCCATCCAACTGCAAGAACAAAAAACACACATGGTTGATCAACCAGTCAAATCATCTTGTACATGGTCTCCCTTATGAGCAAGCAGCTTTGATACTTGAATATCAAAAATCACACAGTCCTAAGAATGCAATTCCATATTCTAGACTCTAACAAGTGCCACTTCTCTGGATGCAAAGCAGTGGGGAAAGGTTCCAATCCTACTGCCAGCCACAGGAAGTCTATTTTGTTTTTGGCCTTGAAAACGCAGGACATGTTCTTTTACTTGAGGAAGGAAATGATAAATAAGGTTTATTGCACTCGTCTTTTTCAACaataataacatttttttttaaaagaggcAAGCTTAAAAAGAGGACGATCTACCTCGCCCTCATGCTAATATCTGACAACGCATGTTATATTACAGCACAGTCACACTATCAACGCTACTAAGAAACCCCTACTTTCAATCAGTCTAATACAAAAACACTCCAAACAGTTACAACCAACACATAATCATTACTACTGTACCCCAATAGGATTTTCACAACTTGATCTATTCTCTACAGCTAGCGAGTTTAATTAAATACATACAACTAAAACAATCTGAATTGATATGCTCAGACTTCAGGAGAAACTACATTTACAGTACTGGTACTGACCATCCAATCTCATGCTTTCCTCATCTCCATGACCACCTTTCTTGGCTCTAACCGCCACAGCATTGAGAGCCATCCTTGAGATGACATTAAAGAATAAAAATGGTTCCATCTTTGGATTTGTGCTTTCAAAAAGTTACTTCAATATTGGTGCAGTCAACATCAGGTAGGATATTGTTCAGATAGTTCACTCCATATGACTCAAGTTCGGAGACCCATAGCATGCACACAGAATCGGGCCAAGAATGTAAAACACGAGTTTCTTATTATAGCtcacatcacatactgtaggttgaGAATGTTCTTTTCAGAGAGATGCGCTCTTCTATGCTTTTACATGTCATTCAAAAGGCTTCCGGAAGGTATAAATGGAAGACCATGCGGTAGACAGAGCATTCATTTAAAAACACATTAAAAAAAAGGCACCAACCACCTCTGAGCTGGTTATCACACAGGTCCAAATGATGGAAGAATCGTGATGAGACCACAAGCAGGGGGAAAGCTAGCATGAGTGATACTCTACAAAACCTCCCACATTAACTAACTTGAGGGGGTAAATAATTATGGCATAGCAGTCCCCCCACTATAGAATGTGTTTTCACACTACTTTTCCTCATGACCTCCATTGAATTACAGATTCTTCTGCCCTTCACATACTAGAACTCTAAATTTGGTCCTTAGAAATCACACTGACAACAAGGTAAGATGTCTGTTCTTTTTCTCCTCTCCAACCGGTATGGAGGTACTTAATTAACAGCGTTATTTGGTTTTAGAGGTGACAGTCGAGCTGACAAGACCGGTAATAAGTGAAATCCCAATTTTTCACTTACAAATATGGCAAAATCCCCCAAACAATCACAAGGCAACCTTGAGCAGTGTGCCACCAACATGGATGCATGTGCTTCTACACCAAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1576748 False 6778 lncRNA 0.40 1 45646351 45653128
TU1576749 True 4020 lncRNA 0.40 1 45649109 45653128

Neighbor

gene id symbol gene type direction distance location
LOC110492109 LOC106567177 coding downstream 18565 45613938 ~ 45627786 (-)
racgap1 racgap1 coding downstream 76616 45562469 ~ 45569735 (-)
LOC110492104 LOC106567172 coding downstream 86798 45547949 ~ 45559553 (-)
pou6f1 LOC106567168 coding downstream 109719 45525987 ~ 45536632 (-)
LOC110492099 LOC106567167 coding downstream 123102 45506079 ~ 45523249 (-)
LOC110492110 LOC106567179 coding upstream 67 45653195 ~ 45658491 (-)
cd63 cd63 coding upstream 138531 45791659 ~ 45818216 (-)
LOC110492119 LOC106567187 coding upstream 183688 45836816 ~ 45842845 (-)
LOC110492907 NA coding upstream 192429 45845557 ~ 45847474 (-)
LOC110492121 spats2 coding upstream 232112 45885240 ~ 45909573 (-)
G1380346 NA non-coding downstream 251 45645794 ~ 45646100 (-)
G1380386 NA non-coding downstream 41487 45603877 ~ 45604864 (-)
G1380361 NA non-coding downstream 101125 45545010 ~ 45545226 (-)
G1380431 NA non-coding upstream 51982 45705110 ~ 45705453 (-)
G1380432 NA non-coding upstream 52910 45706038 ~ 45707477 (-)
G1380437 NA non-coding upstream 76921 45730049 ~ 45730363 (-)
G1380451 NA non-coding upstream 93638 45746766 ~ 45747495 (-)
G1380483 NA non-coding upstream 162931 45816059 ~ 45816299 (-)
slc48a1a LOC106567162 other downstream 325973 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 681869 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1092804 44553014 ~ 44553547 (-)
G1377482 NA other downstream 1953513 43692320 ~ 43692838 (-)
LOC110492748 ppdpf other upstream 763432 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 945569 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 1004339 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 1106159 46724969 ~ 46761466 (-)

Expression


Co-expression Network