G1380432


Basic Information

Item Value
gene id G1380432
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45706038 ~ 45707477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1576853
AGCATCATTTGAAATATGTTTTAACATTCTCAGGATTTATGATATGGCTAACCTCCAATTAGATATATTCAATAGGATAAACTGATGCCTTGCATTGAGAGAAAAGTAAACAATTTGTTTTCAATCCAAACGGTCACTCAATATATTAAAACTAAAAGCTTATTTAAAAAGGACATTTAAGGTCTGCTTTTAAAACAATTCAATGTGGTTTGGTCTTAGGACATTGGGGCAAAGGGTTTCCTGCTTACATACAGAAGCACTAATGAGTgcataatcatttcaaatacaATCTGCATTAATTATGACGTGTGGGTATATTACCACAAGCTTTATGCATTGCAATTACAAATATTTCATAGCTTAATACATCCTAGAAAATTCTAGACTTTCAATGAccatatatttacacacacacacacacacacacacacacttagcaaGAAAAGAAAAgtcctttcactgtcaactgcatttattttcagcaaacttaacatgtgtacatttttgtatgaacataagattcaacaactgagacaaactgaacaagtcccacagacatgtgactaacagaaatggaataatgtgtccctgaacaaaggggggggggggggggggtcaaaatcaaaagtaacagtcagtatctggtgtggccaccaactgcattaagtactgctgtgcatctcctcctcatggactgaaccagatttgccagctcttgctgtgagatgttaccccactcttccaccaaggcacctgcaagttcccggacatttctggagggaatggtcctagccctcaccctccgatccaacaggtcctagacgTGCTCGATGGGATTGAGATTTGGGCTCGTCggtggccatggcagaacacagcaggacatcacacacagaacgaacagtatggctggtggcattgtcatgctggagggtgatgtgatgatgagcctgcaggaagggtaccacatgagggaggaggacgtcttcactgtaacgcacagcgttgagattgcctgcaatgacaacaagctcagtccgatgatactgtgacacaccgccacagaccatgacggacccttcacctccaaatcgatcccgctccagagtacaggccttgctcattccttcgaaaataaacgcaaatctgaccatcacccctggtgagacaaaactgcgactcgtcagtgaagagcactttttgccagtcctgtctggtccagcgacggtgggtttgtgcccataggcgatgttgttgatgtctggtgaggacctgcctattgcggacagtctgagcactgatggagggattgtgcgttcctggtgtaacttgggcagttgttgttgccatcctgtacctgtcctgcaggtgtgatgttcagatgtaccgatcctgtgcaggtgttgttacagtgccttgcgaaagtattcggcccccttgaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1576853 True 1440 lncRNA 0.45 1 45706038 45707477

Neighbor

gene id symbol gene type direction distance location
LOC110492110 LOC106567179 coding downstream 47547 45653195 ~ 45658491 (-)
LOC110492109 LOC106567177 coding downstream 78252 45613938 ~ 45627786 (-)
racgap1 racgap1 coding downstream 136303 45562469 ~ 45569735 (-)
LOC110492104 LOC106567172 coding downstream 146485 45547949 ~ 45559553 (-)
pou6f1 LOC106567168 coding downstream 169406 45525987 ~ 45536632 (-)
cd63 cd63 coding upstream 84182 45791659 ~ 45818216 (-)
LOC110492119 LOC106567187 coding upstream 129339 45836816 ~ 45842845 (-)
LOC110492907 NA coding upstream 138080 45845557 ~ 45847474 (-)
LOC110492121 spats2 coding upstream 177763 45885240 ~ 45909573 (-)
LOC110492124 LOC106572486 coding upstream 236386 45943863 ~ 45948699 (-)
G1380431 NA non-coding downstream 657 45705110 ~ 45705453 (-)
G1380345 NA non-coding downstream 52910 45646351 ~ 45653128 (-)
G1380346 NA non-coding downstream 59938 45645794 ~ 45646100 (-)
G1380386 NA non-coding downstream 101174 45603877 ~ 45604864 (-)
G1380437 NA non-coding upstream 22572 45730049 ~ 45730363 (-)
G1380451 NA non-coding upstream 39289 45746766 ~ 45747495 (-)
G1380483 NA non-coding upstream 108582 45816059 ~ 45816299 (-)
G1380518 pan2 non-coding upstream 156059 45863536 ~ 45865539 (-)
ocstamp ocstamp non-coding upstream 269025 45974366 ~ 45978025 (-)
slc48a1a LOC106567162 other downstream 385660 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 741556 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1152491 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 709083 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 891220 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 949990 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 1051810 46724969 ~ 46761466 (-)
G1381036 NA other upstream 1171134 46878611 ~ 46879146 (-)

Expression


Co-expression Network