G1380518 (pan2)


Basic Information

Item Value
gene id G1380518
gene name pan2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 45863536 ~ 45865539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1576948
ATCAGAATTCTGCCAGACTGACCTGGTTGAGGGTGACAAACTCAGCGTCCAGCCCCACGAGGTCTCCGGCCTGGGGCATCTCACTGACCATGAGGGGGATGAACGTGGCGTGgctcttcctctgcttcctcgCCAGTGATGCCTCTGTCAGCAGCACACTGGCCTCGATGGGGTTTACTGCGTAGGTCGTATTTGGAGTGGTAGTTTCTCTTGGCGTAATACAAGATGGCAGGCACCTTCCAGTTCACATCAAACTGTGCTGCTTCCGCCTTGTCAATTGGCTCAATCAGGAAATCATTGAATAGATACCACTGCTGGTGTGTTACCCCCTCTTTTCTGACGTGATAGGTCTCTCCCACTTTGATGTGTGCTACCAGATTTCCCCCAGTTCGAGCGTCCAGTACATGAGGCACAGTAACCACCAAGTCATAGAGAGACGCTCCTTCAGCCTCCTCAGTGGAGCTCAGCTAAACGATTGGTTAAAGAAAAA

Function

symbol description
pan2 Predicted to enable metal ion binding activity; nucleic acid binding activity; and poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of PAN complex. Predicted to be active in P-body. Orthologous to human PAN2 (poly(A) specific ribonuclease subunit PAN2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1576948 True 490 lncRNA 0.52 4 45863536 45865539

Neighbor

gene id symbol gene type direction distance location
LOC110492907 NA coding downstream 16062 45845557 ~ 45847474 (-)
LOC110492119 LOC106567187 coding downstream 20691 45836816 ~ 45842845 (-)
cd63 cd63 coding downstream 45320 45791659 ~ 45818216 (-)
LOC110492110 LOC106567179 coding downstream 205045 45653195 ~ 45658491 (-)
LOC110492109 LOC106567177 coding downstream 235750 45613938 ~ 45627786 (-)
LOC110492121 spats2 coding upstream 19701 45885240 ~ 45909573 (-)
LOC110492124 LOC106572486 coding upstream 78324 45943863 ~ 45948699 (-)
LOC110492125 LOC106567338 coding upstream 96447 45961986 ~ 45964049 (-)
ocstamp ocstamp coding upstream 108827 45974366 ~ 45978025 (-)
slc13a3 slc13a3 coding upstream 113375 45978914 ~ 45991548 (-)
G1380483 NA non-coding downstream 47237 45816059 ~ 45816299 (-)
G1380451 NA non-coding downstream 116041 45746766 ~ 45747495 (-)
G1380437 NA non-coding downstream 133173 45730049 ~ 45730363 (-)
G1380432 NA non-coding downstream 156059 45706038 ~ 45707477 (-)
G1380431 NA non-coding downstream 158155 45705110 ~ 45705453 (-)
G1380578 NA non-coding upstream 149724 46015263 ~ 46015504 (-)
G1380579 NA non-coding upstream 149982 46015521 ~ 46015767 (-)
G1380601 NA non-coding upstream 166285 46031824 ~ 46032051 (-)
G1380604 NA non-coding upstream 175944 46041483 ~ 46042583 (-)
slc48a1a LOC106567162 other downstream 543158 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 899054 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1309989 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 551021 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 733158 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 791928 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 893748 46724969 ~ 46761466 (-)
G1381036 NA other upstream 1013072 46878611 ~ 46879146 (-)

Expression


Co-expression Network