XLOC_032848


Basic Information

Item Value
gene id XLOC_032848
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 23210551 ~ 23214794 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064742
AGCGCTGCGGAGGCTGAACGGCGAAACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATAGCTGTTGTGATAGAGCTGGACCTGTAGACAAGGGAACTAACACATTTGAGGAAAAAAGAATCCAAAATAAGAGattGGTGTGTGTGGTGAGGGTAAAGAAGTCCACATGCAGCAGCATCTTGGAAATGCTGtaatgcaggggtgcccaaactcagttctggacagctggtgtcctgcagagtttagagtCAACTTCAACTAAACTCTGCAAGACAGCAGCAGTTCTAGACTGAGTTTAGCCACTCCTGTTCTCCTGTAGCGAACTGAACGAGACCCTGCATCAGTCCACCTGCCCTTGTGTCCTCATCTGGACCAGATGTTGCTGTGGTCTCTTCATCATCCGTATCTCGGGCATGGACTGCCATGCATCACCGTCCTGTTTCAGTCTGACTGCAGCAATGAGGGATGTGATGATGGCGAAGTCCCTCTGATCATCTGAAGAACTGGCCCAGCTGTGTGGAGATACAGCAAAACATGGGCTTCTGTCTGTAATACATCACTGTTAGAATAAAGCTTGGTTTCATGTGTTGGTGACTTGTATTTATTTGTCATGATTACTCATATTCattcttttaataatataattatgtttctgtttgttttcaataaataatgataatactttCAA
>TCONS_00065149
tgcaaatgtgtaggTATTTTTTGTCTCCAACAAACACAACGCAACATTTACACCTGCACAAATTCTTCAGTACAGGTGCACAAATCCCATCGGACGAATCACAAATGCAGAAACTCATCCGCTCATGTTCTTTGCTACTATTGTTGCAGTGAATATGGtgcaaaacacattcacacacctgcaTCCAGAAATGTGAAGTCACAGACAAAACTTGCACATCTGTAGATTAGAATGTGTATCCGCACAAAGAGAGCTGAACGTGTGTagaatgtttgattattttttttctaagcacGAACACAAATATGTTCCTGCAACTGCTCAAATCTGCCGCTACGAGTCTCAAGCGCTGTTTTTCACTTGCAAATCTACATTTCGCTCTCTCGCTCTTCTGCACCAAACATCACTGTGACATTTGGTGCAAAAGTTACTTGTGTATCTGCCAACCAAAACGTGGGCTCTCAGAGAAATTCAGCCAATAGGGGATGGGGCGTGACGTCACCGCTCTAGCGCTGCGGAGGCTGAACGGCGAAACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATGTGAGTATTAAACCAAAGACAGTTCTTTGTGTTAAACTCGTATTTGTTGAGCTACTGTACAGTGCACTGTAGAATTGCTGAGGGTGTAAAGAGGCTTTAAATTATAGTCTATTTTATTTCGCTGTAAATGTTGACTGTGTAATCTTACGGTCTCCAGTCAGCACATATAAAGTAACGTTTCAAAGGTAAAAAAGATTATTATCAAATGTCTGACAGAAAAATGTGAAGTATTGCAGATCACAAGACTAAACAGACATCTGAGTGAGTGATGTATTTGTGCTGATGTAGAATCTGCTGTCAATTGACTGTTgccaatactgtttaaattagatACATGTATTCTTACTAAAAGAGAATAAAGGGTCATTTGTTTAATCTGTGCATCAGTATATAGTTGATCACTTGAGGATTTGTGACCGCGTGAGCTTCAAAAAAACACGTTTTGGCAAGCCAGACTCATTAACAATCTTGATtaaaatattagataaatattaattaaatattaaattaaatattagatttaaatataaaaaatattagttttaataattttaatcaatTCAGGCTGCAAAAGATGAAAGAGAAAGTAATTCAGCATAGAGCGCAGATTTCTGTGCGCATCACGCGTCTGAACGCGCATTACCAAATGCACCTCCCTTTAATATCAGTTCATGCAGTCGTATTTCATACAATAGAAAGTCTTAAAGAAcacaaacagttaaacagcactgTGAGATAATCAGGAGATGTATTGGGCCCGCTTAAACATTATAGCATTTTTCTCACGGAAAGAGCAAATATTAATTAGTCTGTTAATGACGCACAGAAACGGACAGATCACAGGCAGTTTCAGTAGTAAAGTTCGTGCAAAGAGCAACATACACAATTCAAACACCAGTGCAAAGCACTTTGTTGCAGTTTGTGTcaaaaacatcaatattttatATAGACACATATCCACACATAATCTTGCTTTCGCTTTGCTCTCTCTAAATGCGCGCTCTTCTCTTGACGCGCGCTGCTGTGTGTACCTCATCTGTAAATTTGGAGATGTTAGTAACTGAACTCATTTCAATATCACTGACTCGATTTATTAGATACGAAAGCCGTGTAACGTGCTATCGATTGACGTTTTGTCTTTTTCCCCCTTTAAATCTCTCAAATTATCATATGTGATCTCTCTGTTATTGGACTTTTTAACTGATAAGGGAAAAACGTCAAAATCATACACAAGATATCTTAAACTGTTACTGTTCACTGCTGTGCTCAACAATAGTgcaatacaatattaaaaattcAGAATTCAATAATGAATAGAATAAATCTTGATAATTCAAGATGTTTCAGGGAGCAGGTCGACGCACACAGAGCGCCATGATAAAGCACATGAAAcgccatgtgtgtgtttattaaaacatgttatatgcaaaataaattagatttttttttgataggCTATAAATGATACTGTATTAGCTATCACTAATAAGTAGGCTAATATGCAAAGAAAATCTGCtattcaaaaatttgtttgttagttataaaaaaatattaatgtccATATTGGCTCtggtgcattaaataataataacaacattaagatttttttttaaatgacaaattatagaAAATAGTATGGAATGTTGAAATTCTTTAAAGGTATCATCTTAAGGTTGTAAATTCCAACACTAaagttaaaacatatttaatttttataattcagcttttgctgtacaaatgattaaatgttttagggaataaaaagttttatattgtttGTCAACTCTGTCATGGATGACTTTAGTaatgtttagaaataataataaatcatagcaAGAAAAATCGTAATGTGTAGTTACTAAATTTAAACTGAATTGACAGTAATTTAGTTTTACAACTTTTTAGCAAAACCTTTTACTTGCTATAACGGCAAAGATCACATGATACTAAtgaaatcaggcttaaaatatttttttatttgtaaaatatgtgattaatgaaatattcagttttccttttgtaattgtgataataatagcattgacagtttacagtttaaacatttaaaattaaaatattggtgaatttttctttaaagaaaagcaaaataaattatttttgcatGATGGAAATATGTACTGGCTAATTTGTAAATCAAGAAATCGTGATTTTTGGTAATGTGATCTTTGAAAAtgatgaacacattttataaataaataatcaaaaatgtaacaatgtaatgtaacaattttttttaaaagctgaaaaaaggATGGCTTTGGTCACTAAATGTACctgcaactacagaatcacccaTATAGTTCATGGAGAGCAACATGTTTTTCTGGAGTTTTCTTGCAAAACTTGGAAACATCACGTAAGCAAGCAAACAGTGACATAAATAGAATCTGCAGTACAAAtactagttttaaaataaaagttagtttgCTTTATCAGAATGACAGAGAAtactataaattattttattatatatatatatatatatatatatatatatatatatatatataatttgtttatttttttaatttgcccACCCTAAAGTTCCAAGCTGGAGCCGGGCCTGATGACAGAGGTGATTTATTCTAGTCTCTATGTTACAGGGAGGCTTTTATTGAGTAcagtacagaaaataaaaaaacatattttacatttgctatttattattattattagttattgtattttcaaACAGTGATTACATCAGCTTTCTGAttaatgttgtgtgtgtgctttttctgcAGAGCTGTTGTGATAGAGCTGGACCTGTAGACAAGGGAACTAACACATTTGAGGAAAAAAGAATCCAAAATAAGAGGTAGGATAATTTTATTACTAGCACTACAGAAATCAAATGACACATTGTACAGTAAAATGacattgttttttatgttttgtttgatctgaaatatctgcagattGGTGTGTGTGGTGAGGGTAAAGAAGTCCACATGCAGCAGCATCTTGGAAATGCTGtaatgcaggggtgcccaaactcagttctggacagctggtgtcctgcagagtttagagtCAACTTCAACTAAACTCTGCAAGACAGCAGCAGTTCTAGACTGAGTTTAGCCACTCCTGTTCTCCTGTAGCGAACTGAACGAGACCCTGCATCAGTCCACCTGCCCTTGTGTCCTCATCTGGACCAGATGTTGCTGTGGTCTCTTCATCATCCGTATCTCGGGCATGGACTGCCATGCATCACCGTCCTGTTTCAGTCTGACTGCAGCAATGAGGGATGTGATGATGGCGAAGTCCCTCTGATCATCTGAAGAACTGGCCCAGCTGTGTGGAGATACAGCAAAACATGGGCTTCTGTCTGTAATACATCACTGTTAGAATAAAGCTTGGTTTCATGTGTTGGTGACTTGTATTTATTTGTCATGATTACTCATATTCattcttttaataatataattatgtttctgtttgttttcaataaataatgataatactttCAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064742 False 871 lncRNA 0.45 3 23210551 23214286
TCONS_00065149 True 4244 lncRNA 0.34 1 23210551 23214794

Neighbor

gene id symbol gene type direction distance location
XLOC_032847 ten1 coding downstream 93203 23107602 ~ 23117348 (-)
XLOC_032846 NA coding downstream 192071 23018053 ~ 23018480 (-)
XLOC_032845 nol11 coding downstream 208178 22957709 ~ 23002373 (-)
XLOC_032844 BX537277.1 coding downstream 669475 22540982 ~ 22541076 (-)
XLOC_032843 nprl2 coding downstream 841426 22352223 ~ 22369125 (-)
XLOC_032849 CR376761.1 coding upstream 180049 23394843 ~ 23394899 (-)
XLOC_032850 NA coding upstream 205375 23420169 ~ 23421738 (-)
XLOC_032851 aanat1 coding upstream 402099 23616893 ~ 23619428 (-)
XLOC_032852 sec16b coding upstream 676436 23891230 ~ 23931442 (-)
XLOC_032853 GNG12 coding upstream 740580 23955374 ~ 24053616 (-)
XLOC_032842 NA non-coding downstream 1028675 22181262 ~ 22181876 (-)
XLOC_032830 NA non-coding downstream 1701512 21504503 ~ 21509039 (-)
XLOC_032829 NA non-coding downstream 1712516 21496479 ~ 21498035 (-)
XLOC_032859 NA non-coding upstream 1003134 24217928 ~ 24219177 (-)
XLOC_032864 BX004768.2 non-coding upstream 1571033 24785827 ~ 24785943 (-)
XLOC_032865 BX005463.1 non-coding upstream 1627376 24842170 ~ 24842286 (-)

Expression


Co-expression Network