G1380584 (LOC100136165)


Basic Information

Item Value
gene id G1380584
gene name LOC100136165
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 46137031 ~ 46138625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1577026
TTCAATAAAATATCAAGTACCATTAAAACATGTGTACATTTTCATCATATTAAGAGATTACTTAATTCATTGACAATACTGTTACAAAGAGTTGCATCATACCTCTGCAGTGGGCTACAACACTTCCCTTGATAACCACTGCTCCAGATAAAGAAAGGTATTTTTAAATAACAGAATATTTATCAATATTCTATATAAAATACAAAGCCCTTACAGAAATACTGCATACACAAAATGAATAAAGACAGAATGAAGGTGACAAGTCAAGAATCATGAATGGTTGCACATTCCATGCACCTTCTGTGCTTAATCACGACGTGTCTTGTAAACTGTTGGGGGCTTTTTCCACATATAGATTCTGTACACAAACGTAACATATTGGAATCACTTTTTCAGAATTATGGCACAGCGATAAATGGGTTTTTAAGTCCGTGCCTGATAAAGTACCGGTTTCCAGCGGTGTGTGGGCACTCCGGTGTGGCTAACACTAACCGGTGGCAGAAAGCAAGTTACGCAGGGTGGCAAGTTCTCTTGACAGCTGCTCCACGCGTTTTTGTAAACGATCATTCTCTGCGGCCAGTTCCAGCACTTTGTGTTGCGTCTCCGTATTGCGCATTTTGGCTTTATCCCTGCTCTTTCTAACAGCAAGGTTGTTCCTCTCCCGCCTCTGCTTATATTCCTCACTGTTCTTTTCCAGTCGCTTCTTCCCCTTGACACCAGACGACATTTTCCCGCCCCGCGAAGGCGACGTGCATTTACCTGACAGTGCAGGTGTACCGGGTGGACTGGAGGAAGACGAGGATGCAGTGGAAATGTTACCAAGGCTGCCACTTGGAGTCGACTGGTAATGAAGATACCTCATGTCGTAGCCAGTTGAACCGTTGTCCATTCTTGGGTCCTCTTGAGACTCGTCTCTTTCACCGGATTTAAAGTGGTTCCCAATAAACTCCGGGCTGAACACGGTGTCCACACGGGTCTCCTGCAGTTCAGGATAGCCCAGGACGTATGGCTCTCTATTGTCGTGCACACTTGTCTCCCGCTCGTTGAGAGATATGTAGTTTCTGTAGTTTTGTTGTAATGATGAACGTCTCTTTATCCTGCTTTCCTCGGCAAGGAAATCTGCGAATATGTCTACCCCTCTCTGATGACTTTCGTTTTGTGTTGCCAGTTGTTGACAGTGCGCAGCAGGAGGATCCAAGTAGACACTGAAATCTATCGCTTTCTCGTTCTCGGCTATGCCAAGCTCCGTCATCGAGCCGTCAATGGGCTGCTTGCAAGTGCTGTTATCGCTAATGGGCCTGATAATGCAGTTTGTACTCTGGAAAGCAAAGCAATCCCTGTCGTAGAAACCGGCCACTTCCATGGATCTTAACACCCGCTGGATTGCGGGAACATCGAAACCAGGGGCAGACGCCCGGGAAATTGGCTACGCGAGTAGGCCGAAATTCTGTCTGAAAACACTAACGTATATTGTCACACGACTCAATGTCACTGTGACAATATTGAGTTATTGAAGAAAACAAGAAACTTGAAGAATTAGCTATTACTCAGCAGAAAGTTGTTGTCAATGTCACCAGAATGACGAGTAAAGTTGA

Function

NR:

description
CCAAT/enhancer-binding protein beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1577026 True 1595 lncRNA 0.45 1 46137031 46138625

Neighbor

gene id symbol gene type direction distance location
peds1 tm189 coding downstream 2285 46129671 ~ 46134746 (-)
LOC110492133 LOC105022328 coding downstream 14150 46115201 ~ 46122881 (-)
slc52a3 slc52a3 coding downstream 25816 46103115 ~ 46111215 (-)
scrt2 scrt2 coding downstream 76149 46051699 ~ 46060882 (-)
srxn1 srxn1 coding downstream 96997 46037962 ~ 46040034 (-)
LOC110492134 LOC106567201 coding upstream 12972 46151597 ~ 46165561 (-)
LOC110492740 LOC106567210 coding upstream 141703 46280328 ~ 46284105 (-)
LOC110492742 LOC106567211 coding upstream 148612 46287237 ~ 46293439 (-)
LOC110492744 LOC106567213 coding upstream 179219 46317844 ~ 46330626 (-)
LOC110492745 mare1 coding upstream 192229 46330854 ~ 46337487 (-)
G1380645 NA non-coding downstream 198 46136600 ~ 46136833 (-)
G1380585 NA non-coding downstream 9389 46127394 ~ 46127642 (-)
G1380637 NA non-coding downstream 38891 46097669 ~ 46098140 (-)
G1380636 NA non-coding downstream 39762 46097029 ~ 46097269 (-)
G1380634 NA non-coding downstream 41325 46095120 ~ 46095706 (-)
G1380646 NA non-coding upstream 1158 46139783 ~ 46140126 (-)
G1380647 NA non-coding upstream 2589 46141214 ~ 46142075 (-)
G1380671 klhl12 non-coding upstream 38663 46177288 ~ 46177878 (-)
G1380711 NA non-coding upstream 104258 46242883 ~ 46243173 (-)
G1380682 NA non-coding upstream 110110 46248735 ~ 46253139 (-)
G1380431 NA other downstream 431578 45705110 ~ 45705453 (-)
LOC110492109 LOC106567177 other downstream 509333 45613938 ~ 45627786 (-)
slc48a1a LOC106567162 other downstream 816653 45315947 ~ 45320378 (-)
plxna2 LOC106567158 other downstream 1172549 44621739 ~ 44964691 (-)
G1378530 NA other downstream 1583484 44553014 ~ 44553547 (-)
LOC110492748 ppdpf other upstream 277935 46416560 ~ 46419996 (-)
LOC110492764 fkb1a other upstream 460072 46598697 ~ 46601691 (-)
LOC110492767 LOC106572444 other upstream 518842 46657459 ~ 46668762 (-)
LOC110491077 LOC106567232 other upstream 620662 46724969 ~ 46761466 (-)
G1381036 NA other upstream 739986 46878611 ~ 46879146 (-)

Expression


Co-expression Network